| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2022 |
|---|
| Symbol | gapC |
|---|
| ID | 6967263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 1921811 |
|---|
| End bp | 1922812 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643385939 |
|---|
| Product | glyceraldehyde-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_002270428 |
|---|
| Protein GI | 209399787 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.00000572719 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG TTGGTATTAA CGGTTTTGGT CGTATCGGTC GACTGGTGTT GCGTCGATTA
CTTGAAGTCA AAAGCAACAT AGACGTTGTC GCTATTAATG ATCTTACTTC CCCAAAAATT
CTCGCCTATC TGCTGAAACA TGATTCAAAC TATGGTCCGT TCCCCTGGAG CGTTGATTTT
ACGGAAGATT CACTTATCGT TGATGGGAAA AGTATCGCGG TTTACGCCGA AAAAGAGGCT
AAAAATATTC CGTGGAAAGC GAAAGGTGCA GAAATCATTG TCGAATGTAC TGGCTTTTAT
ACCTCCGCCG AGAAATCGCA GGCGCATCTT GATGCTGGCG CGAAGAAGGT GTTGATTTCC
GCCCCTGCAG GTGAAATGAA AACTATCGTT TATAAAGTCA ATGACGACAC TCTGGATGGC
AACGACACCA TTGTTTCCGT GGCATCATGC ACTACTAACT GTCTTGCGCC GATGGCCAAA
GCCTTGCATG ACAGTTTCGG GATAGAAGTC GGCACGATGA CGACCATTCA TGCCTATACT
GGCACCCAGT CACTGGTGGA TGGCCCGCGT GGTAAAGATT TACGTGCTTC ACGCGCCGCG
GCAGAAAATA TCATTCCCCA CACTACGGGC GCGGCAAAAG CCATTGGTCT GGTGATCCCG
GAACTGAGCG GCAAACTGAA AGGTCATGCG CAACGCGTGC CGGTGAAAAC AGGTTCGGTC
ACTGAACTGG TATCGATTCT CGGAAAAAAA GTGACTGCCG AAGAGGTGAA TAACGCACTT
AAACAAGCAA CCACCAATAA CGAGTCATTT GGTTATACCG ATGAAGAAAT AGTCTCTTCC
GATATCATTG GCAGCCATTT CGGTTCGGTG TTTGATGCCA CGCAAACGGA AATTACCGCC
GTGGGCGATT TACAACTGGT GAAAACGGTC GCCTGGTACG ACAACGAATA TGGCTTCGTC
ACGCAGCTTA TTCGCACCCT CGAAAAATTC GCTAAACTCT GA
|
|---|
| Protein sequence | MSKVGINGFG RIGRLVLRRL LEVKSNIDVV AINDLTSPKI LAYLLKHDSN YGPFPWSVDF
TEDSLIVDGK SIAVYAEKEA KNIPWKAKGA EIIVECTGFY TSAEKSQAHL DAGAKKVLIS
APAGEMKTIV YKVNDDTLDG NDTIVSVASC TTNCLAPMAK ALHDSFGIEV GTMTTIHAYT
GTQSLVDGPR GKDLRASRAA AENIIPHTTG AAKAIGLVIP ELSGKLKGHA QRVPVKTGSV
TELVSILGKK VTAEEVNNAL KQATTNNESF GYTDEEIVSS DIIGSHFGSV FDATQTEITA
VGDLQLVKTV AWYDNEYGFV TQLIRTLEKF AKL
|
|---|
| |