Gene Cpin_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1397 
Symbol 
ID8357517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp1665826 
End bp1666842 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content46% 
IMG OID644963556 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_003121095 
Protein GI256420442 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAACTA CTCTTAAAAT CGGTATTAAT GGTTTCGGTC GTATTGGCCG CTTAGTATAC 
CGTCAGATCT ACAAGATGCC AGGCATAGAC GTGGTAGCTA TTAATGACCT TACAAGTCCC 
GCTGTATTAG CTCATCTGTT GAAGTACGAT TCTGCACAGG GTCGTTTCGA TTCAGAAGTT 
AAGCATTCTG ATAACGCCAT CACCGTTGAC GGTAATGAGG TAAAAATATA CGCACAGAGA 
GATCCTTCAC AAATTCCCTG GAAAGAGCAT GGTATTGATG TGGTGATTGA ATCTACAGGT 
TTCTTTGCAG ATAAAGATAA AGCAGCAGCT CACCTGACCG CAGGCGCTAA AAGAGTAGTA 
ATCTCTGCTC CTGCTACCGG CGACCTGAAA ACAGTAGTTT TCAACGTAAA CCATGATATC 
CTCGATGGTA GCGAAACTAT CATCTCCTGC GCTTCATGTA CTACGAACTG TCTGGCGCCA 
ATGGCGAAAG TACTGGATGA TTCCTTCGGT ATCGAACTGG GTACTATGAC CACCATCCAC 
GCTTACACCA ATGACCAGAA CACCCTGGAC GCTCCGCATC CAAAAGGTGA CCTGCGCCGT 
GCTCGTGCCG CTGCAGCTAA CATCGTTCCA AACAGCACCG GTGCTGCTAA AGCAATCGGC 
CTGGTACTGC CTTCCCTGAA AGGTAAACTG GATGGTAACG CACAGCGTGT TCCAACTATC 
ACTGGCTCCC TGACTGAACT GGTTTCCGTT CTGAAGAAGA AAGTAACCGC TGAAGAAATA 
AACGCTGCAA TGAAAGCTGC CGCTAACGAA TCTTTCGGTT ATACTGAAGA TGAAATCGTA 
AGCACTGACA TCGTTGGTAT CAACTACGGT TCACTGTATG ATGCTACTCA GACGAAAGTT 
ATCACTGTTG GCGATAAACA ACTGGTGAAA ACTGTATCCT GGTACGATAA CGAAATGAGC 
TACGTTTCTC AGCTCGTTCG TACAGTGAAA TACTTCGCTG GTCTGATCAA CAAATAA
 
Protein sequence
MGTTLKIGIN GFGRIGRLVY RQIYKMPGID VVAINDLTSP AVLAHLLKYD SAQGRFDSEV 
KHSDNAITVD GNEVKIYAQR DPSQIPWKEH GIDVVIESTG FFADKDKAAA HLTAGAKRVV 
ISAPATGDLK TVVFNVNHDI LDGSETIISC ASCTTNCLAP MAKVLDDSFG IELGTMTTIH 
AYTNDQNTLD APHPKGDLRR ARAAAANIVP NSTGAAKAIG LVLPSLKGKL DGNAQRVPTI 
TGSLTELVSV LKKKVTAEEI NAAMKAAANE SFGYTEDEIV STDIVGINYG SLYDATQTKV 
ITVGDKQLVK TVSWYDNEMS YVSQLVRTVK YFAGLINK