Gene Tcr_0245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0245 
Symbol 
ID3761510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp293974 
End bp294975 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content45% 
IMG OID637784950 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_390515 
Protein GI78484590 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0000000792128 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATTA AAGTTGGTAT TAACGGTTTT GGCCGTATCG GTCGTATGGC TTTCCGCGCA 
GCTGCAAAAG ATTTTGCAAA CATTGAAGTT GTTGCAATTA ACGATCTTCT AGATCCTGAA 
TACCTAGCTT ACATGCTGAA GTATGATTCT GTTCACGGTC GTTTCGACGG AACCGTTGAA 
GTGAAAGACG GGAACTTGGT TGTTAACGGT AAAACAATCC GTATCACTGC AGAGCGCAAC 
CCTGCTGACC TAGCTTGGTC TGATGTCGGT GCTGACCTAG TCATCGAATG TACTGGTTTC 
TTCCTAACAG AAGAATCTTG TCAAGCGCAT ATCGAAGCCG GTGCGAAGAA AGTTGTTCAA 
TCGGCGCCTT CTAAAGATCA CACGCCAATG TTTGTATATG GTGTTAACCA TGAAGAATAT 
GCTGGTCAAG CAATCGTTTC TGCAGCATCT TGTACAACGA ACGGTTTGGC GCCAGTGGCT 
AAAGTATTGA ACGACAACTT CGGTATCAAG CGTGGTCTGA TGACGACTGT TCATGCTGCA 
ACAGCTACTC AGAAAACAGT TGACGGTCCT TCTATGAAAG ACTGGCGCGG TGGTCGTGGT 
ATTCTTGAGA ATATCATCCC TTCTTCAACT GGTGCGGCAA AAGCAGTAGG TAAAGTATTA 
CCAGCCCTTA ACGGTAAGTT AACGGGTATG GCTTTCCGTG TACCAACGTC TGATGTTTCA 
GTTGTTGACC TAACGGTTGA GCTTGAAAAA GAAACGTCTT ATGACGACAT TTGTGCAGCG 
ATGAAGAAAG CTTCTGAAGG CGAAATGGCG GGCGTTCTTG GTTACACTGA AGAAGCTAAC 
GTTTCAACAG ACTTCCGTGG TGATTCTCAC CCATCTATCT TTGACGCTAA AGCAGGTATC 
GCACTGGATC CTACGTTCGT TAAAGTGGTT GCATGGTATG ACAACGAGTA TGGTTATACA 
TGTAACATGA TGCGTGTTGT TGAGCATGTA GGTAACAACT AA
 
Protein sequence
MTIKVGINGF GRIGRMAFRA AAKDFANIEV VAINDLLDPE YLAYMLKYDS VHGRFDGTVE 
VKDGNLVVNG KTIRITAERN PADLAWSDVG ADLVIECTGF FLTEESCQAH IEAGAKKVVQ 
SAPSKDHTPM FVYGVNHEEY AGQAIVSAAS CTTNGLAPVA KVLNDNFGIK RGLMTTVHAA 
TATQKTVDGP SMKDWRGGRG ILENIIPSST GAAKAVGKVL PALNGKLTGM AFRVPTSDVS 
VVDLTVELEK ETSYDDICAA MKKASEGEMA GVLGYTEEAN VSTDFRGDSH PSIFDAKAGI 
ALDPTFVKVV AWYDNEYGYT CNMMRVVEHV GNN