51 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
GM21_0258  CDS  NC_012918  312312  315758  3447  pyruvate carboxylase  YP_003020101  n/a    decreased coverage  0.000175777  Geobacter sp. M21  Bacteria 
 
 
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GM21_0477  CDS  NC_012918  585384  586601  1218  branched-chain alpha-keto acid dehydrogenase subunit E2  YP_003020315  n/a    decreased coverage  1.78114e-15  Geobacter sp. M21  Bacteria 
 
 
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GM21_0478  CDS  NC_012918  586770  587861  1092  Glutamate dehydrogenase (NAD(P)(+))  YP_003020316  n/a    decreased coverage  1.37425e-15  Geobacter sp. M21  Bacteria 
 
 
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GM21_0562  CDS  NC_012918  687703  688359  657  isoprenoid biosynthesis protein with amidotransferase-like domain  YP_003020394  n/a    decreased coverage  5.37092e-33  Geobacter sp. M21  Bacteria 
 
 
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GM21_0710  CDS  NC_012918  851347  851835  489  hypothetical protein  YP_003020542  n/a    decreased coverage  3.66002e-31  Geobacter sp. M21  Bacteria 
 
 
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GM21_0711  CDS  NC_012918  851948  852484  537  hypothetical protein  YP_003020543  n/a    decreased coverage  3.69726e-31  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_0712  CDS  NC_012918  852478  855237  2760  ribonuclease, Rne/Rng family  YP_003020544  n/a    decreased coverage  6.98043e-32  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_0812  CDS  NC_012918  965876  967336  1461  hypothetical protein  YP_003020641  n/a    decreased coverage  3.47749e-12  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_1173  CDS  NC_012918  1365574  1366083  510  transcriptional regulator, MucR family  YP_003020992  n/a    decreased coverage  7.26691e-34  Geobacter sp. M21  Bacteria 
 
 
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GM21_1174  CDS  NC_012918  1366279  1366482  204  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003020993  n/a    decreased coverage  3.46083e-34  Geobacter sp. M21  Bacteria 
 
 
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GM21_1175  CDS  NC_012918  1366597  1367667  1071  2-ketoisovalerate ferredoxin reductase  YP_003020994  n/a    decreased coverage  2.07576e-33  Geobacter sp. M21  Bacteria 
 
 
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GM21_1321  CDS  NC_012918  1551164  1551886  723  regulatory protein GntR HTH  YP_003021139  n/a    decreased coverage  2.57427e-29  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_1356  CDS  NC_012918  1599203  1599667  465  transcriptional regulator, AsnC family  YP_003021173  n/a    decreased coverage  7.27209e-29  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_1482  CDS  NC_012918  1734616  1735485  870  hypothetical protein  YP_003021296  n/a    decreased coverage  7.29144e-05  Geobacter sp. M21  Bacteria 
 
 
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GM21_1709  CDS  NC_012918  1989968  1991548  1581  hypothetical protein  YP_003021521  n/a    decreased coverage  2.98029e-32  Geobacter sp. M21  Bacteria 
 
 
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GM21_1710  CDS  NC_012918  1991787  1992830  1044  rod shape-determining protein MreB  YP_003021522  n/a    decreased coverage  1.08427e-32  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_1779  CDS  NC_012918  2068306  2070417  2112  metal dependent phosphohydrolase  YP_003021591  n/a    decreased coverage  1.72323e-06  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_1846  CDS  NC_012918  2146981  2147499  519  nitroreductase  YP_003021657  n/a    decreased coverage  0.000122819  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2050  CDS  NC_012918  2373324  2376128  2805  aconitate hydratase  YP_003021860  n/a    decreased coverage  1.50453e-23  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2051  CDS  NC_012918  2376443  2376733  291  protein of unknown function DUF156  YP_003021861  n/a    decreased coverage  7.44014e-26  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2083  CDS  NC_012918  2417064  2418125  1062  NADH:flavin oxidoreductase/NADH oxidase  YP_003021893  n/a    decreased coverage  4.33995e-32  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2129  CDS  NC_012918  2485384  2486235  852  DNA/RNA non-specific endonuclease  YP_003021939  n/a    decreased coverage  7.00063e-09  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2210  CDS  NC_012918  2580543  2581277  735  hypothetical protein  YP_003022018  n/a    decreased coverage  5.25818e-21  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2284  CDS  NC_012918  2663905  2665248  1344  hypothetical protein  YP_003022091  n/a    decreased coverage  3.44842e-08  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2285  CDS  NC_012918  2665423  2666169  747  ABC transporter related  YP_003022092  n/a    decreased coverage  1.4239e-08  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2286  CDS  NC_012918  2666156  2666941  786  polar amino acid ABC transporter, inner membrane subunit  YP_003022093  n/a    decreased coverage  2.63216e-09  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2287  CDS  NC_012918  2667098  2667844  747  extracellular solute-binding protein family 3  YP_003022094  n/a    decreased coverage  1.77355e-08  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2394  CDS  NC_012918  2793233  2793898  666  protein of unknown function DUF159  YP_003022199  n/a    decreased coverage  1.19161e-31  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2395  CDS  NC_012918  2793928  2794467  540  nuclease (SNase domain protein)  YP_003022200  n/a    decreased coverage  1.82521e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2690  CDS  NC_012918  3130904  3133777  2874  preprotein translocase subunit SecA  YP_003022484  n/a    decreased coverage  9.11051e-18  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2691  CDS  NC_012918  3134027  3135067  1041  tRNA 2-selenouridine synthase  YP_003022485  n/a    decreased coverage  1.73073e-18  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2692  CDS  NC_012918  3135042  3135935  894  hypothetical protein  YP_003022486  n/a    decreased coverage  2.45501e-19  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_2981  CDS  NC_012918  3462276  3465218  2943  translation initiation factor IF-2  YP_003022768  n/a    decreased coverage  2.22631e-28  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3074  CDS  NC_012918  3564962  3567517  2556  putative signal transduction protein with Nacht domain  YP_003022860  n/a    decreased coverage  4.39797e-24  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3333  CDS  NC_012918  3855856  3856227  372  30S ribosomal protein S12  YP_003023116  n/a    decreased coverage  1.70711e-17  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3442  CDS  NC_012918  3978348  3978920  573  hypothetical protein  YP_003023223  n/a    decreased coverage  3.6631e-29  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3494  CDS  NC_012918  4034945  4036306  1362  signal recognition particle protein  YP_003023274  n/a    decreased coverage  1.28336e-32  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3495  CDS  NC_012918  4036478  4037065  588  SirA family protein  YP_003023275  n/a    decreased coverage  1.70288e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3496  CDS  NC_012918  4037062  4037325  264  hypothetical protein  YP_003023276  n/a    decreased coverage  9.77797e-34  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3497  CDS  NC_012918  4037421  4037687  267  hypothetical protein  YP_003023277  n/a    decreased coverage  1.0483e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3498  CDS  NC_012918  4037701  4038162  462  protein of unknown function DUF721  YP_003023278  n/a    decreased coverage  1.68574e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3499    NC_012918  4038348  4038722  375      n/a    decreased coverage  1.4677e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3500  CDS  NC_012918  4038780  4039580  801  methyltransferase small  YP_003023279  n/a    decreased coverage  4.35876e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3501  CDS  NC_012918  4039581  4040573  993  glycosyl transferase family 2  YP_003023280  n/a    decreased coverage  8.13712e-33  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3502  CDS  NC_012918  4040570  4042153  1584  hypothetical protein  YP_003023281  n/a    decreased coverage  2.77995e-32  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3852  CDS  NC_012918  4436756  4437550  795  FRG domain protein  YP_003023627  n/a    decreased coverage  6.80889e-06  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3853  CDS  NC_012918  4437794  4438729  936  hypothetical protein  YP_003023628  n/a    decreased coverage  7.31814e-06  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3901  CDS  NC_012918  4487408  4487602  195  hypothetical protein  YP_003023676  n/a    decreased coverage  0.000111847  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_3902  CDS  NC_012918  4487799  4489205  1407  histidine kinase  YP_003023677  n/a    decreased coverage  0.000116044  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_4011  CDS  NC_012918  4596134  4597417  1284  glutamate-1-semialdehyde aminotransferase  YP_003023785  n/a    decreased coverage  4.49886e-31  Geobacter sp. M21  Bacteria 
 
 
-
 
GM21_4012  CDS  NC_012918  4597573  4598610  1038  General secretory system II protein E domain protein  YP_003023786  n/a    decreased coverage  3.66345e-31  Geobacter sp. M21  Bacteria 
 
 
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