28 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Acry_0262  CDS  NC_009484  302070  302897  828  glycine cleavage T-protein, C-terminal barrel  YP_001233409  decreased coverage  0.00715457  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0325  CDS  NC_009484  376130  376969  840  PhzF family phenazine biosynthesis protein  YP_001233471  decreased coverage  0.00679482  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0326  CDS  NC_009484  377157  377384  228  hydrogenase assembly chaperone hypC/hupF  YP_001233472  decreased coverage  0.00530973  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0336  CDS  NC_009484  385002  385736  735  Ni/Fe-hydrogenase, b-type cytochrome subunit  YP_001233482  decreased coverage  0.00129504  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0488  CDS  NC_009484  541973  542452  480  hypothetical protein  YP_001233631  decreased coverage  0.00232982  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0641  CDS  NC_009484  723209  724993  1785  hypothetical protein  YP_001233781  decreased coverage  0.00375147  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0735  CDS  NC_009484  822257  822487  231  hypothetical protein  YP_001233874  decreased coverage  0.00190192  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0862  CDS  NC_009484  952829  954745  1917  RNA polymerase sigma factor RpoD  YP_001234000  decreased coverage  0.0093579  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0888  CDS  NC_009484  979155  980207  1053  fimbrial assembly family protein  YP_001234026  decreased coverage  4.54237e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_0889  CDS  NC_009484  980257  980853  597  hypothetical protein  YP_001234027  decreased coverage  1.06051e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1084  CDS  NC_009484  1208098  1208664  567  hypothetical protein  YP_001234218  decreased coverage  0.00362147  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1207  CDS  NC_009484  1342448  1344514  2067  protein of unknown function DUF893, YccS/YhfK  YP_001234338  decreased coverage  0.00411304  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1215  CDS  NC_009484  1351968  1352849  882  glucose-1-phosphate thymidylyltransferase  YP_001234345  decreased coverage  0.00725031  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1328  CDS  NC_009484  1484503  1485717  1215  tryptophan synthase subunit beta  YP_001234458  decreased coverage  0.000691779  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1584  CDS  NC_009484  1749973  1750689  717  respiratory nitrate reductase, gamma subunit  YP_001234709  decreased coverage  8.63008e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1590  CDS  NC_009484  1756712  1757740  1029  alcohol dehydrogenase  YP_001234715  decreased coverage  0.00466455  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1747  CDS  NC_009484  1927822  1929348  1527  histidine ammonia-lyase  YP_001234870  decreased coverage  5.10266e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1872  CDS  NC_009484  2064736  2065431  696  hypothetical protein  YP_001234993  decreased coverage  0.00204012  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_1896  CDS  NC_009484  2091722  2093497  1776  Sel1 domain-containing protein  YP_001235016  decreased coverage  7.46321e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2181  CDS  NC_009484  2407144  2407896  753  carboxymethylenebutenolidase  YP_001235298  decreased coverage  0.00295739  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2216  CDS  NC_009484  2449820  2450857  1038  periplasmic binding protein/LacI transcriptional regulator  YP_001235333  decreased coverage  4.5016e-05  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2453  CDS  NC_009484  2708493  2708984  492  hypothetical protein  YP_001235565  decreased coverage  0.00273719  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2467  CDS  NC_009484  2723185  2723928  744  short-chain dehydrogenase/reductase SDR  YP_001235578  decreased coverage  0.00674966  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2661  CDS  NC_009484  2920614  2921087  474  ApaG  YP_001235771  decreased coverage  0.00116294  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2688  CDS  NC_009484  2950816  2951901  1086  peptidoglycan-binding LysM  YP_001235798  decreased coverage  0.00047104  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2733  CDS  NC_009484  2994341  2994916  576  hypothetical protein  YP_001235843  decreased coverage  0.00413498  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_2799  CDS  NC_009484  3067479  3069152  1674  sulfite reductase subunit beta  YP_001235909  decreased coverage  0.00507806  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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Acry_3449  CDS  NC_009468  165544  166482  939  hypothetical protein  YP_001220195  decreased coverage  0.00537518  n/a    Acidiphilium cryptum JF-5  Bacteria 
 
 
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