| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_0862 |
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| Symbol | |
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| ID | 5160402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidiphilium cryptum JF-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009484 |
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| Strand | + |
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| Start bp | 952829 |
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| End bp | 954745 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640552778 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001234000 |
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| Protein GI | 148259873 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0093579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACCA AACAAGCTGC TCCCGCCGAG ACCGCCGCGC CCGAGGCCGA GGCGGACACC
GCGACGCTCG ACATCCAGTC GGCCTCGGTC AAGCGCCTGA TCGCCCGCGG CAAGGAGCGG
GGCTACATCA CCTTCGACGA GCTGAATGCC GTCCTGCCCT CCGAGCAGAA CAGCTCCGAG
CAGATCGAGG ACGTGATGTC GATGCTCAGC GAAATGGGCA TCCAGGTGGT CGAGGGCGAG
GAAGGCGAGG AGGCGGAAAC CGCCGGCCGC GCCGAGAAGG ACGAGGAGGC CGCCGAGGAC
GAGGAGGCCG CCTCCGGCAA TATCAGCGAA TCGAGCGGCA GCCGCACCGA CGATCCCGTC
CGCATGTACC TGCGCGAGAT GGGCACGGTC GAGCTGCTCT CGCGCGAGGG CGAGATCGCC
ATCGCCAAGC GCATCGAGGC CGGGCGCGAC ATGATGATCG GCGGGCTCTG CGAAAGCCCG
CTGACCTTCC GCGCGATCAT CTCGTGGCAC GAATCCCTCA AGGACGGGAA GATGCTGCTG
CGCGACGTGA TCGACCTCGA GGCCACCCAG GGCGGCGGCG ATGGCGGCTT CAACCCCTCC
GCCGCGGTCC CCGAGGAACC CGAGGAGGAC GAGGAGGGCG AATCGAGCGG CCTCTCGCTC
TCCGCCGTCG AGGAGAAGCT CAAGCCCGAG GTGTTCGAGA CCTTCACCGA GGTCGAGAAG
CTCTACGAGA AGTTCATGAA GCTCCAGCAC AAGCGGCTGG AGGCGCTGAA CGCCGGCGAG
GAAATGGCCT CCCGCTCGGA GAAGACCTAC GAGAAGCTGC GCGACGAGCT GGTGGCCAAG
GTCGAGCAGG TCAGCCTGCA CAACAACCGC ATCGAGGAGC TGGTCATCCA GCTCAAGGAG
CTGAACCAGC GCCTGAACGG GCTGGAAGGC CAGATGCTGC GCCTCGCCGA GGGCTGCAAG
ATCACCCGCG ACGACTTTCT CGACGCCTAT CGCGGCCGCG AGATGGACCC CACCTGGCTC
GACGACGTGG CGAAACGCCC CGGCAAGGGC TGGAAGGTCT TCGTCGAGCG CTACGGCACC
CAGGTCACCG AGCTGCGCGC CCAGATCGGC CGCATCGCCG CCGAGGCGCA GCTGCCGATC
GAGGAATTCC GCCGCGTCTA TTCCACCGTC TCGCGCGGCG AGCGCGACTC CACCCGCGCC
AAGAAGGAAA TGATCGAGGC CAATCTCCGC CTCGTCATCT CCATCGCCAA GAAATACACC
AATCGCGGCC TGCAATTCCT CGACCTGATC CAGGAAGGCA ATATCGGCCT GATGAAGGCG
GTGGACAAAT TCGAATACCG CCGCGGCTAC AAGTTCTCGA CCTACGCCAC CTGGTGGATC
CGCCAGGCGA TCACCCGCTC GATCGCCGAC CAGGCGCGCA CCATCCGCAT CCCGGTCCAC
ATGATCGAGA CGATCAACAA GCTGGTCCGC ACCTCGCGGC AGATGCTGCA CGAGATCGGC
CGCGAGCCCA CGCCCGAGGA ACTGGCCGAG AAGCTCGGCA TGCCGCTCGA GAAGGTGCGC
AAGGTGCTCA AGATCGCCAA GGAGCCGATC TCCCTCGAAA CCCCGATCGG CGACGAGGAA
GACAGCCATC TCGGCGACTT CATCGAGGAC AAGAACGCGA TCATCCCGCT CGATGCCGCG
GTTCATGCCA ACCTGCGCGA GGCCGCGACG CGCGTCCTCT CCTCGCTCAC CCCGCGCGAG
GAGCGCGTGC TGCGCATGCG CTTCGGCATC GGCATGAACA CCGACCACAC GCTGGAAGAG
GTCGGCCAGC AGTTCAACGT CACCCGCGAG CGCATCCGCC AGATCGAGGC GAAGGCCCTG
CGCAAGCTCA AGCACCCCTC GCGCAGCCGC AAGCTCAGGA GCTTCCTCGA GGACTGA
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| Protein sequence | MATKQAAPAE TAAPEAEADT ATLDIQSASV KRLIARGKER GYITFDELNA VLPSEQNSSE
QIEDVMSMLS EMGIQVVEGE EGEEAETAGR AEKDEEAAED EEAASGNISE SSGSRTDDPV
RMYLREMGTV ELLSREGEIA IAKRIEAGRD MMIGGLCESP LTFRAIISWH ESLKDGKMLL
RDVIDLEATQ GGGDGGFNPS AAVPEEPEED EEGESSGLSL SAVEEKLKPE VFETFTEVEK
LYEKFMKLQH KRLEALNAGE EMASRSEKTY EKLRDELVAK VEQVSLHNNR IEELVIQLKE
LNQRLNGLEG QMLRLAEGCK ITRDDFLDAY RGREMDPTWL DDVAKRPGKG WKVFVERYGT
QVTELRAQIG RIAAEAQLPI EEFRRVYSTV SRGERDSTRA KKEMIEANLR LVISIAKKYT
NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH
MIETINKLVR TSRQMLHEIG REPTPEELAE KLGMPLEKVR KVLKIAKEPI SLETPIGDEE
DSHLGDFIED KNAIIPLDAA VHANLREAAT RVLSSLTPRE ERVLRMRFGI GMNTDHTLEE
VGQQFNVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLED
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