66 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Bcep18194_A3183  CDS  NC_007510  1822  2928  +  1107  DNA polymerase III subunit beta  YP_367429  decreased coverage  0.00267181  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3370  CDS  NC_007510  227059  228255  +  1197  flagellar biosynthesis protein FlhB  YP_367616  decreased coverage  0.00184569  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3450  CDS  NC_007510  323968  324795  +  828  50S ribosomal protein L2  YP_367696  hitchhiker  0.00000000764843  decreased coverage  0.00435128  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3451  CDS  NC_007510  324806  325081  +  276  30S ribosomal protein S19  YP_367697  hitchhiker  0.00000000490482  decreased coverage  0.00387887  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3452  CDS  NC_007510  325094  325423  +  330  50S ribosomal protein L22  YP_367698  hitchhiker  0.0000000048605  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3453  CDS  NC_007510  325435  326235  +  801  30S ribosomal protein S3  YP_367699  hitchhiker  0.000000212964  decreased coverage  0.00445176  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3454  CDS  NC_007510  326238  326654  +  417  50S ribosomal protein L16  YP_367700  hitchhiker  0.0000000581922  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3455  CDS  NC_007510  326664  326858  +  195  50S ribosomal protein L29  YP_367701  hitchhiker  0.0000000252439  decreased coverage  0.00364799  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3456  CDS  NC_007510  326855  327127  +  273  30S ribosomal protein S17  YP_367702  hitchhiker  0.0000000000380443  decreased coverage  0.00396929  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3457  CDS  NC_007510  327437  327805  +  369  50S ribosomal protein L14  YP_367703  hitchhiker  0.000000000989644  decreased coverage  0.00422034  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3458  CDS  NC_007510  327815  328123  +  309  50S ribosomal protein L24  YP_367704  hitchhiker  0.0000000515991  decreased coverage  0.00425299  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3459  CDS  NC_007510  328140  328679  +  540  50S ribosomal protein L5  YP_367705  hitchhiker  0.000000529438  decreased coverage  0.00459021  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3460  CDS  NC_007510  328687  328992  +  306  30S ribosomal protein S14  YP_367706  hitchhiker  0.000000254777  decreased coverage  0.00448614  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3461  CDS  NC_007510  329007  329402  +  396  30S ribosomal protein S8  YP_367707  hitchhiker  0.000000315626  decreased coverage  0.00455507  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3462  CDS  NC_007510  329421  329951  +  531  50S ribosomal protein L6  YP_367708  hitchhiker  0.0000287307  decreased coverage  0.00473222  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3558  CDS  NC_007510  424146  424784  +  639  TPR repeat-containing protein  YP_367803  decreased coverage  0.000842214  normal  0.636992  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3559  CDS  NC_007510  424831  425346  +  516  hypothetical protein  YP_367804  decreased coverage  0.00132458  normal  0.648001  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3650  CDS  NC_007510  535710  536906  +  1197  cell division protein FtsZ  YP_367895  decreased coverage  0.000000496958  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3651  CDS  NC_007510  537095  537601  +  507  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_367896  decreased coverage  0.0000135148  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3935  CDS  NC_007510  855248  856687  -  1440  EmrB/QacA family drug resistance transporter  YP_368178  normal  1  decreased coverage  0.000976381  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3944  CDS  NC_007510  866483  867265  +  783  putative transmembrane transcriptional regulator (anti-sigma factor)  YP_368187  decreased coverage  0.00740335  normal  0.0369582  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3954  CDS  NC_007510  877442  877735  +  294  co-chaperonin GroES  YP_368197  decreased coverage  0.0000645476  normal  0.0983553  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A3969  CDS  NC_007510  890447  891508  +  1062  dTDP-glucose 4,6-dehydratase  YP_368212  decreased coverage  0.00429727  normal  0.623158  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4112  CDS  NC_007510  1042185  1042457  -  273  hypothetical protein  YP_368353  decreased coverage  0.0000000000132695  normal  0.421912  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4123  CDS  NC_007510  1050950  1052683  -  1734  FAD-dependent oxidoreductase  YP_368364  decreased coverage  0.000743874  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4124  CDS  NC_007510  1052848  1053657  -  810  LuxR family transcriptional regulator  YP_368365  decreased coverage  0.000894771  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4175  CDS  NC_007510  1110871  1111620  +  750  electron transfer flavoprotein subunit beta  YP_368416  decreased coverage  0.00698848  normal  0.410728  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4230  CDS  NC_007510  1166100  1166735  +  636  hypothetical protein  YP_368471  decreased coverage  0.00879956  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4311  CDS  NC_007510  1258289  1258624  -  336  hypothetical protein  YP_368551  decreased coverage  0.0000144232  normal  0.216196  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4312  CDS  NC_007510  1258818  1259246  +  429  hypothetical protein  YP_368552  decreased coverage  0.000185847  normal  0.213102  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4313  CDS  NC_007510  1259337  1259792  +  456  BadM/Rrf2 family transcriptional regulator  YP_368553  decreased coverage  0.0000750143  normal  0.208214  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4429  CDS  NC_007510  1385439  1386245  +  807  hydroxyacylglutathione hydrolase  YP_368669  decreased coverage  0.0000000156624  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4525  CDS  NC_007510  1489617  1491932  +  2316  cellulose synthase regulator protein  YP_368765  decreased coverage  0.00483718  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4613  CDS  NC_007510  1594331  1594684  +  354  endoribonuclease L-PSP  YP_368853  decreased coverage  0.00014505  normal  0.903485  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4614  CDS  NC_007510  1594724  1596958  +  2235  (p)ppGpp synthetase I, SpoT/RelA  YP_368854  decreased coverage  0.00159088  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4663  CDS  NC_007510  1654382  1655725  +  1344  Flp pilus assembly protein ATPase CpaF  YP_368902  normal  0.0858858  decreased coverage  0.000709192  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4664  CDS  NC_007510  1655718  1656698  +  981  Flp pilus assembly protein TadB  YP_368903  normal  0.265819  decreased coverage  0.000651584  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4665  CDS  NC_007510  1656703  1657701  +  999  Flp pilus assembly protein TadC  YP_368904  normal  0.502777  decreased coverage  0.000679832  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4666  CDS  NC_007510  1657731  1658558  +  828  TPR-repeat pilus assembly protein TadD  YP_368905  normal  0.988456  decreased coverage  0.000651584  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4667  CDS  NC_007510  1658582  1658914  +  333  hypothetical protein  YP_368906  normal  0.613007  decreased coverage  0.000608941  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4668  CDS  NC_007510  1658927  1660738  +  1812  membrane protein  YP_368907  normal  0.270258  decreased coverage  0.000905292  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4687  CDS  NC_007510  1682499  1682984  +  486  hypothetical protein  YP_368926  decreased coverage  0.00000161275  normal  0.469864  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4740  CDS  NC_007510  1730870  1731772  +  903  Sulfate ABC transporter, inner membrane subunit CysT  YP_368979  decreased coverage  0.00816228  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4741  CDS  NC_007510  1731769  1732719  +  951  Sulfate ABC transporter, inner membrane subunit CysW  YP_368980  decreased coverage  0.00402264  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4789  CDS  NC_007510  1802652  1804028  +  1377  lysine/ornithine N-monooxygenase  YP_369028  decreased coverage  0.00013329  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4790  CDS  NC_007510  1804051  1806303  +  2253  TonB-dependent siderophore receptor  YP_369029  decreased coverage  0.00609925  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4843  CDS  NC_007510  1861011  1862339  +  1329  major facilitator transporter  YP_369082  decreased coverage  0.000178164  normal  0.0122394  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4845  CDS  NC_007510  1863248  1864414  +  1167  ABC transporter, periplasmic ligand binding protein  YP_369084  normal  0.0226871  decreased coverage  0.000145502  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4846  CDS  NC_007510  1864464  1865543  +  1080  ABC transporter, ATPase subunit  YP_369085  normal  0.106176  decreased coverage  0.000133931  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A4847  CDS  NC_007510  1865581  1866450  +  870  ABC transporter, inner membrane subunit  YP_369086  normal  0.131167  decreased coverage  0.000130269  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5127  CDS  NC_007510  2170208  2170534  -  327  hypothetical protein  YP_369365  decreased coverage  0.0017453  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5251  CDS  NC_007510  2305048  2305596  +  549  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_369489  decreased coverage  0.0000129337  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5398  CDS  NC_007510  2466974  2467243  +  270  hypothetical protein  YP_369636  decreased coverage  0.00136275  normal  0.270235  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5399  CDS  NC_007510  2467357  2468133  -  777  Beta-lactamase-like  YP_369637  decreased coverage  0.00646528  normal  0.27837  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5400  CDS  NC_007510  2468138  2469283  -  1146  uncharacterized lipoprotein  YP_369638  decreased coverage  0.00915986  normal  0.289961  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5470  CDS  NC_007510  2554269  2555171  +  903  LysR family transcriptional regulator  YP_369708  decreased coverage  0.000367157  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5614  CDS  NC_007510  2712949  2715033  -  2085  potassium-transporting ATPase subunit B  YP_369852  decreased coverage  0.00425653  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5746  CDS  NC_007510  2851838  2852596  +  759  3-ketoacyl-(acyl-carrier-protein) reductase  YP_369984  decreased coverage  0.00520623  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5767  CDS  NC_007510  2878788  2879432  +  645  OmpA/MotB family protein  YP_370005  decreased coverage  0.00312455  normal  0.42403  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A5852  CDS  NC_007510  2969212  2969415  +  204  cold-shock DNA-binding protein family protein  YP_370090  decreased coverage  0.0000000000587256  normal  0.480668  Burkholderia sp. 383  Bacteria 
 
 
 
Bcep18194_A6131  CDS  NC_007510  3275219  3276100  +  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_370369  decreased coverage  0.000000000359515  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A6220  CDS  NC_007510  3376599  3377807  -  1209  Acyl-CoA dehydrogenase  YP_370458  decreased coverage  0.0082466  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_A6494  CDS  NC_007510  3663873  3664928  +  1056  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  YP_370732  decreased coverage  0.000128013  normal  0.750448  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0020  tRNA  NC_007510  300859  300941  +  83  tRNA-Tyr    decreased coverage  0.0000000000230184  normal  1  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0039  tRNA  NC_007510  1053831  1053903  -  73  tRNA-Thr    decreased coverage  0.000122131  normal  0.654023  Burkholderia sp. 383  Bacteria 
 
 
-
 
Bcep18194_AR0043  tRNA  NC_007510  1192554  1192626  +  73  tRNA-Gly    decreased coverage  0.00341468  normal  0.996518  Burkholderia sp. 383  Bacteria 
 
 
-
 
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