22 homologs were found in PanDaTox collection
for query gene Tpau_R0052 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014158  Tpau_R0052  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 92 bp  182  1e-44  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
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NC_009077  Mjls_R0051  SRP RNA; RNA component of signal recognition particle  95.56 
 
 		 93 bp  147  5e-34  Mycobacterium sp. JLS  Bacteria  normal  0.415125  normal  1 
 
 
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NC_009338  Mflv_R0010  SRP RNA; RNA component of signal recognition particle  95.56 
 
 		 93 bp  147  5e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751419  normal  0.854673 
 
 
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NC_008705  Mkms_R0053  SRP RNA; RNA component of signal recognition particle  95.51 
 
 		 94 bp  145  2e-33  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
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NC_008726  Mvan_R0058  SRP RNA; RNA component of signal recognition particle  94.44 
 
 		 93 bp  139  1e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0164888  normal  1 
 
 
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NC_013441  Gbro_R0009  SRP RNA; RNA component of signal recognitionparti cle  92.86 
 
 		 92 bp  119  9.999999999999999e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
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NC_009921  Franean1_R0055  SRP RNA; RNA component of signal recognition particle  91.38 
 
 		 99 bp  75.8  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.603304  normal  1 
 
 
-
 
NC_007777  Francci3_R0006  SRP RNA; RNA component of signal recognition particle  89.66 
 
 		 92 bp  67.9  0.0000000004  Frankia sp. CcI3  Bacteria  normal  0.747626  normal  1 
 
 
-
 
NC_014165  Tbis_R0064  SRP RNA; RNA component of signal recognitionparti cle  87.84 
 
 		 89 bp  67.9  0.0000000004  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.787076 
 
 
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NC_013159  Svir_36630  bacterial signal recognition particle RNA  85.54 
 
 		 102 bp  61.9  0.00000002  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00364935  normal  0.318237 
 
 
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NC_014210  Ndas_R0060  SRP RNA; RNA component of signal recognition particle  90 
 
 		 91 bp  60  0.0000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.48161  normal  1 
 
 
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NC_013595  Sros_R0087  SRP RNA; RNA component of signal recognitionparti cle  87.14 
 
 		 91 bp  60  0.0000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008541  Arth_R0009  SRP RNA; RNA component of signal recognition particle  88.68 
 
 		 90 bp  58  0.0000004  Arthrobacter sp. FB24  Bacteria  normal  0.408467  n/a   
 
 
-
 
NC_013947  Snas_R0050  SRP RNA; RNA component of signal recognitionparti cle  89.8 
 
 		 89 bp  58  0.0000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.222343  normal  1 
 
 
-
 
NC_011886  Achl_R0008  SRP RNA; RNA component of signal recognitionparti cle  88.68 
 
 		 90 bp  58  0.0000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
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NC_013510  Tcur_R0074  SRP RNA; RNA component of signal recognitionparti cle  85.94 
 
 		 91 bp  56  0.000002  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
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NC_008578  Acel_R0058  SRP RNA; RNA component of signal recognition particle  84 
 
 		 91 bp  54  0.000006  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
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NC_013521  Sked_04670    93.75 
 
 		 100 bp  48.1  0.0004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.310268  normal  0.967006 
 
 
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NC_013530  Xcel_R0010  SRP RNA; RNA component of signal recognitionparti cle  93.75 
 
 		 93 bp  48.1  0.0004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
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NC_013235  Namu_R0009  SRP RNA; RNA component of signalrecognitionparti cle  87.5 
 
 		 90 bp  48.1  0.0004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
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NC_013169  Ksed_25960  Bacterial signal recognition particle RNA  93.75 
 
 		 105 bp  48.1  0.0004  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  1 
 
 
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NC_008699  Noca_R0009  SRP RNA; RNA component of signal recognition particle  86.54 
 
 		 91 bp  48.1  0.0004  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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