29 homologs were found in PanDaTox collection
for query gene Ndas_R0060 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_R0060  SRP RNA; RNA component of signal recognition particle  100 
 
 
91 bp  180  4e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.48161  normal 
 
 
-
 
NC_007333  Tfu_R0003  SRP RNA; RNA component of signal recognitionparticle  94.32 
 
 
92 bp  135  1.9999999999999998e-30  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_R0064  SRP RNA; RNA component of signal recognitionparti cle  91.86 
 
 
89 bp  115  2.0000000000000002e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.787076 
 
 
-
 
NC_013595  Sros_R0087  SRP RNA; RNA component of signal recognitionparti cle  90.8 
 
 
91 bp  109  1e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_R0074  SRP RNA; RNA component of signal recognitionparti cle  92.41 
 
 
91 bp  109  1e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_R0006  SRP RNA; RNA component of signal recognition particle  91.11 
 
 
92 bp  107  5e-22  Frankia sp. CcI3  Bacteria  normal  0.747626  normal 
 
 
-
 
NC_009664  Krad_R0006  SRP RNA; RNA component of signal recognition particle  89.77 
 
 
93 bp  95.6  2e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.558781  normal  0.197707 
 
 
-
 
NC_013947  Snas_R0050  SRP RNA; RNA component of signal recognitionparti cle  96.43 
 
 
89 bp  95.6  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.222343  normal 
 
 
-
 
NC_013093  Amir_R0010  SRP RNA; RNA component of signal recognitionparti cle  96.36 
 
 
100 bp  93.7  7e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_R0055  SRP RNA; RNA component of signal recognition particle  88.89 
 
 
99 bp  91.7  3e-17  Frankia sp. EAN1pec  Bacteria  normal  0.603304  normal 
 
 
-
 
NC_008726  Mvan_R0058  SRP RNA; RNA component of signal recognition particle  96.15 
 
 
93 bp  87.7  4e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0164888  normal 
 
 
-
 
NC_013159  Svir_36630  bacterial signal recognition particle RNA  91.8 
 
 
102 bp  81.8  0.00000000000003  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00364935  normal  0.318237 
 
 
-
 
NC_009077  Mjls_R0051  SRP RNA; RNA component of signal recognition particle  94.23 
 
 
93 bp  79.8  0.0000000000001  Mycobacterium sp. JLS  Bacteria  normal  0.415125  normal 
 
 
-
 
NC_009338  Mflv_R0010  SRP RNA; RNA component of signal recognition particle  94.23 
 
 
93 bp  79.8  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751419  normal  0.854673 
 
 
-
 
NC_008705  Mkms_R0053  SRP RNA; RNA component of signal recognition particle  94.23 
 
 
94 bp  79.8  0.0000000000001  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_R0009  SRP RNA; RNA component of signal recognition particle  92.59 
 
 
91 bp  75.8  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_R0058  SRP RNA; RNA component of signal recognition particle  89.23 
 
 
91 bp  73.8  0.000000000006  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_R0052  SRP RNA; RNA component of signal recognition particle  89.23 
 
 
92 bp  73.8  0.000000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.100687  decreased coverage  0.00000833927 
 
 
-
 
NC_008541  Arth_R0009  SRP RNA; RNA component of signal recognition particle  91.07 
 
 
90 bp  71.9  0.00000000002  Arthrobacter sp. FB24  Bacteria  normal  0.408467  n/a   
 
 
-
 
NC_013441  Gbro_R0009  SRP RNA; RNA component of signal recognitionparti cle  90.38 
 
 
92 bp  63.9  0.000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_R0010  SRP RNA; RNA component of signal recognitionparti cle  88.33 
 
 
93 bp  63.9  0.000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_R0052  SRP RNA; RNA component of signal recognitionparti cle  90 
 
 
92 bp  60  0.00000009  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04670    89.29 
 
 
100 bp  56  0.000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.310268  normal  0.967006 
 
 
-
 
NC_013235  Namu_R0009  SRP RNA; RNA component of signalrecognitionparti cle  88.46 
 
 
90 bp  56  0.000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_R0008  SRP RNA; RNA component of signal recognitionparti cle  87.5 
 
 
90 bp  56  0.000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010730  SYO3AOP1_R0052  SRP RNA; RNA component of signal recognition particle  94.29 
 
 
98 bp  54  0.000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_R0011  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 
90 bp  48.1  0.0004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.207458  normal 
 
 
-
 
NC_012803  Mlut_02680  Bacterial signal recognition particle RNA  85.71 
 
 
100 bp  48.1  0.0004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.218549  n/a   
 
 
-
 
NC_013501  Rmar_R0038  SRP RNA; RNA component of signal recognitionparti cle  91.18 
 
 
108 bp  44.1  0.006  Rhodothermus marinus DSM 4252  Bacteria  normal  0.263697  n/a   
 
 
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