30 homologs were found in PanDaTox collection
for query gene Franean1_R0055 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009921  Franean1_R0055  SRP RNA; RNA component of signal recognition particle  100 
 
 		 99 bp  196  7e-49  Frankia sp. EAN1pec  Bacteria  normal  0.603304  normal  1 
 
 
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NC_007777  Francci3_R0006  SRP RNA; RNA component of signal recognition particle  97.8 
 
 		 92 bp  165  2.0000000000000002e-39  Frankia sp. CcI3  Bacteria  normal  0.747626  normal  1 
 
 
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NC_008578  Acel_R0058  SRP RNA; RNA component of signal recognition particle  96.61 
 
 		 91 bp  101  3e-20  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  1 
 
 
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NC_013510  Tcur_R0074  SRP RNA; RNA component of signal recognitionparti cle  96.55 
 
 		 91 bp  99.6  1e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
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NC_008705  Mkms_R0053  SRP RNA; RNA component of signal recognition particle  95 
 
 		 94 bp  95.6  2e-18  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
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NC_009077  Mjls_R0051  SRP RNA; RNA component of signal recognition particle  95 
 
 		 93 bp  95.6  2e-18  Mycobacterium sp. JLS  Bacteria  normal  0.415125  normal  1 
 
 
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NC_009338  Mflv_R0010  SRP RNA; RNA component of signal recognition particle  95 
 
 		 93 bp  95.6  2e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751419  normal  0.854673 
 
 
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NC_009664  Krad_R0006  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 93 bp  95.6  2e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.558781  normal  0.197707 
 
 
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NC_014210  Ndas_R0060  SRP RNA; RNA component of signal recognition particle  88.89 
 
 		 91 bp  91.7  3e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.48161  normal  1 
 
 
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NC_014151  Cfla_R0052  SRP RNA; RNA component of signal recognition particle  92.42 
 
 		 92 bp  91.7  3e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.100687  decreased coverage  0.00000833927 
 
 
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NC_008726  Mvan_R0058  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 93 bp  87.7  5e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0164888  normal  1 
 
 
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NC_014165  Tbis_R0064  SRP RNA; RNA component of signal recognitionparti cle  94.64 
 
 		 89 bp  87.7  5e-16  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.787076 
 
 
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NC_013947  Snas_R0050  SRP RNA; RNA component of signal recognitionparti cle  94.64 
 
 		 89 bp  87.7  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.222343  normal  1 
 
 
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NC_013595  Sros_R0087  SRP RNA; RNA component of signal recognitionparti cle  94.64 
 
 		 91 bp  87.7  5e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
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NC_013530  Xcel_R0010  SRP RNA; RNA component of signal recognitionparti cle  92.19 
 
 		 93 bp  87.7  5e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
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NC_008699  Noca_R0009  SRP RNA; RNA component of signal recognition particle  92.86 
 
 		 91 bp  79.8  0.0000000000001  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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NC_013441  Gbro_R0009  SRP RNA; RNA component of signal recognitionparti cle  91.67 
 
 		 92 bp  79.8  0.0000000000001  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_R0003  SRP RNA; RNA component of signal recognitionparticle  91.38 
 
 		 92 bp  75.8  0.000000000002  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
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NC_014158  Tpau_R0052  SRP RNA; RNA component of signal recognitionparti cle  91.38 
 
 		 92 bp  75.8  0.000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
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NC_008541  Arth_R0009  SRP RNA; RNA component of signal recognition particle  92.31 
 
 		 90 bp  71.9  0.00000000003  Arthrobacter sp. FB24  Bacteria  normal  0.408467  n/a   
 
 
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NC_011886  Achl_R0008  SRP RNA; RNA component of signal recognitionparti cle  92.31 
 
 		 90 bp  71.9  0.00000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
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NC_013521  Sked_04670    88.89 
 
 		 100 bp  69.9  0.0000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.310268  normal  0.967006 
 
 
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NC_013159  Svir_36630  bacterial signal recognition particle RNA  93.33 
 
 		 102 bp  65.9  0.000000002  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00364935  normal  0.318237 
 
 
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NC_013093  Amir_R0010  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 		 100 bp  65.9  0.000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_012803  Mlut_02680  Bacterial signal recognition particle RNA  90.38 
 
 		 100 bp  63.9  0.000000007  Micrococcus luteus NCTC 2665  Bacteria  normal  0.218549  n/a   
 
 
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NC_013235  Namu_R0009  SRP RNA; RNA component of signalrecognitionparti cle  91.3 
 
 		 90 bp  60  0.0000001  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
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NC_013174  Jden_R0011  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 90 bp  54  0.000007  Jonesia denitrificans DSM 20603  Bacteria  normal  0.207458  normal  1 
 
 
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NC_013169  Ksed_25960  Bacterial signal recognition particle RNA  93.94 
 
 		 105 bp  50.1  0.0001  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  1 
 
 
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NC_013721  HMPREF0424_1408  Bacterial signal recognition particle RNA  86.27 
 
 		 98 bp  46.1  0.002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  1 
 
 
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NC_013501  Rmar_R0038  SRP RNA; RNA component of signal recognitionparti cle  91.18 
 
 		 108 bp  44.1  0.006  Rhodothermus marinus DSM 4252  Bacteria  normal  0.263697  n/a   
 
 
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