17 homologs were found in PanDaTox collection
for query gene TM1040_0390 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0390  hypothetical protein  100 
 
 
266 aa  540  9.999999999999999e-153  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2182  putative transcriptional regulator  39.27 
 
 
264 aa  159  5e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.293373  normal  0.188357 
 
 
-
 
NC_011368  Rleg2_4501  helix-turn-helix domain protein  37.35 
 
 
261 aa  148  8e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0769508  normal 
 
 
-
 
NC_010501  PputW619_0552  Cro/CI family transcriptional regulator  33.59 
 
 
269 aa  137  1e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.213682 
 
 
-
 
NC_008700  Sama_0788  transcriptional regulator  32.42 
 
 
270 aa  134  1.9999999999999998e-30  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0540  Cro/CI family transcriptional regulator  33.91 
 
 
269 aa  124  1e-27  Pseudomonas putida GB-1  Bacteria  normal  0.781184  normal 
 
 
-
 
NC_009656  PSPA7_2990  hypothetical protein  32.44 
 
 
272 aa  122  8e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_35470  hypothetical protein  31.7 
 
 
272 aa  120  1.9999999999999998e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.030822  hitchhiker  0.00555849 
 
 
-
 
NC_009512  Pput_0531  Cro/CI family transcriptional regulator  32.61 
 
 
269 aa  119  3e-26  Pseudomonas putida F1  Bacteria  normal  0.532711  normal 
 
 
-
 
NC_002947  PP_0497  Cro/CI family transcriptional regulator  32.61 
 
 
269 aa  119  3.9999999999999996e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0134  helix-turn-helix domain-containing protein  35.09 
 
 
272 aa  114  2.0000000000000002e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2650  transcriptional regulator  29.12 
 
 
271 aa  109  4.0000000000000004e-23  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00061055  normal  0.037615 
 
 
-
 
NC_010512  Bcenmc03_6961  XRE family transcriptional regulator  31.01 
 
 
275 aa  109  6e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.512084  normal 
 
 
-
 
NC_008060  Bcen_1526  hypothetical protein  31.01 
 
 
322 aa  108  1e-22  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.818031  n/a   
 
 
-
 
NC_008544  Bcen2424_6303  hypothetical protein  31.01 
 
 
322 aa  108  1e-22  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.519477 
 
 
-
 
NC_008686  Pden_1093  XRE family transcriptional regulator  28.31 
 
 
280 aa  91.7  1e-17  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0872  XRE family transcriptional regulator  44.3 
 
 
266 aa  61.6  0.00000001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.336664 
 
 
-
 
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