12 homologs were found in PanDaTox collection
for query gene Sare_0448 on replicon NC_009953
Organism: Salinispora arenicola CNS-205



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009953  Sare_0448  XRE family transcriptional regulator  100 
 
 
137 aa  274  4e-73  Salinispora arenicola CNS-205  Bacteria  normal  0.242028  decreased coverage  0.00000314035 
 
 
-
 
NC_009380  Strop_0377  XRE family transcriptional regulator  80.88 
 
 
138 aa  216  7e-56  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_0866  helix-turn-helix domain-containing protein  48 
 
 
147 aa  112  1.0000000000000001e-24  Salinispora tropica CNB-440  Bacteria  normal  0.438105  normal 
 
 
-
 
NC_009953  Sare_0812  XRE family transcriptional regulator  47.58 
 
 
156 aa  110  7.000000000000001e-24  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00335965 
 
 
-
 
NC_009380  Strop_4015  helix-turn-helix domain-containing protein  38.4 
 
 
189 aa  88.2  4e-17  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3742  helix-turn-helix domain-containing protein  40.91 
 
 
111 aa  70.1  0.000000000009  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3793  helix-turn-helix domain-containing protein  40.91 
 
 
111 aa  70.1  0.000000000009  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0729404 
 
 
-
 
NC_012791  Vapar_1033  transcriptional regulator, XRE family  31.11 
 
 
195 aa  41.2  0.005  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2192  transcriptional regulator, XRE family  31.07 
 
 
218 aa  41.2  0.005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.426149  n/a   
 
 
-
 
NC_011206  Lferr_1806  transcriptional regulator, XRE family  36.62 
 
 
181 aa  40.8  0.007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2148  DNA-binding protein, putative  36.62 
 
 
181 aa  40.8  0.007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3748  hypothetical protein  52.94 
 
 
127 aa  40.4  0.008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
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