10 homologs were found in PanDaTox collection
for query gene PP_3031 on replicon NC_002947
Organism: Pseudomonas putida KT2440



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_3031  pyocin R2_PP, transcriptional activator prtN  100 
 
 		 105 aa  218  3e-56  Pseudomonas putida KT2440  Bacteria  normal  0.453113  normal  0.0918719 
 
 
-
 
NC_004578  PSPTO_3425  transcriptional regulator, putative  71.13 
 
 		 107 aa  136  1e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.0000176936  n/a   
 
 
-
 
NC_009439  Pmen_3988  hypothetical protein  57.95 
 
 		 109 aa  106  1e-22  Pseudomonas mendocina ymp  Bacteria  normal  0.0146108  normal  0.105596 
 
 
-
 
NC_009656  PSPA7_0754  transcriptional regulator PrtN  50 
 
 		 104 aa  101  3e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0155188  n/a   
 
 
-
 
NC_008463  PA14_07950  transcriptional regulator PrtN  51.16 
 
 		 104 aa  98.6  3e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0561092  hitchhiker  0.00216354 
 
 
-
 
NC_009656  PSPA7_2364  hypothetical protein  30.99 
 
 		 94 aa  47  0.00008  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_1680  hypothetical protein  29.49 
 
 		 97 aa  45.4  0.0003  Sinorhizobium medicae WSM419  Bacteria  normal  0.124193  normal  0.187707 
 
 
-
 
NC_008390  Bamb_2416  hypothetical protein  32.39 
 
 		 86 aa  41.6  0.004  Burkholderia ambifaria AMMD  Bacteria  normal  0.178664  n/a   
 
 
-
 
NC_009049  Rsph17029_2021  hypothetical protein  34.33 
 
 		 87 aa  41.6  0.004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_1712  hypothetical protein  28.4 
 
 		 92 aa  40.8  0.006  Pseudomonas putida GB-1  Bacteria  normal  0.197592  hitchhiker  0.00000613594 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>