10 homologs were found in PanDaTox collection
for query gene Lcho_3189 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010524  Lcho_3189  hypothetical protein  100 
 
 		 210 aa  421  1e-117  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00130632 
 
 
-
 
NC_010524  Lcho_1871  patatin  42.23 
 
 		 499 aa  138  6e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0785452 
 
 
-
 
NC_013510  Tcur_1996  glucose-methanol-choline oxidoreductase  32.37 
 
 		 786 aa  89  5e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0521503  n/a   
 
 
-
 
NC_003296  RS05823  hypothetical protein  28.16 
 
 		 1150 aa  73.6  0.000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.483181 
 
 
-
 
NC_007492  Pfl01_5219  glucose-methanol-choline oxidoreductase  27.91 
 
 		 1150 aa  73.2  0.000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.0000490282  unclonable  0.0000721023 
 
 
-
 
NC_010623  Bphy_5113  glucose-methanol-choline oxidoreductase  29.7 
 
 		 1132 aa  72  0.000000000006  Burkholderia phymatum STM815  Bacteria  normal  0.302627  hitchhiker  0.00736765 
 
 
-
 
NC_007952  Bxe_B1816  hypothetical protein  29.9 
 
 		 1152 aa  69.3  0.00000000004  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.649165 
 
 
-
 
NC_009338  Mflv_4476  hypothetical protein  30.19 
 
 		 207 aa  68.6  0.00000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  hitchhiker  0.00485655 
 
 
-
 
NC_010676  Bphyt_4847  glucose-methanol-choline oxidoreductase  28.35 
 
 		 1152 aa  65.5  0.0000000005  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.000971365  normal  0.0494922 
 
 
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NC_008541  Arth_1255  FAD dependent oxidoreductase  29.63 
 
 		 889 aa  58.9  0.00000006  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
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