Gene Lcho_3189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3189 
Symbol 
ID6162791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3527109 
End bp3527741 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content70% 
IMG OID641665963 
Producthypothetical protein 
Protein accessionYP_001792212 
Protein GI171059863 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00130632 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAACCA GCCCCCCTTC AAACGCCTCC GGCGTGACCT TCCGCGAAAC CATGGCGGGC 
CCGTTCAAGC TCGGCCTGGT CGATCCCAAG GCCGTGCCCG ACGGCGCGCC CGAACTGGCG 
ATGCACGCGG TGGTCGAGAT CGACGACATC GAGGCCTTCC GCGCCGACCC GCAGCACAAG 
GCCCGGCTGA GCGGCACCAT CGACTACCCG CCGCTGGGCA CCGGCCTGGT CGCGCCCAGC 
GGGGTGTTCG GCCTGTTCAG CCCGAGCCAC GACCCGAAGC TGGCGTACAT GGTCTACGAA 
CTGGCCTTCG AACACGCCGG CAAGCCGCAT TACCTGGCCG GCAAGAAGCA CGTGCTGGTG 
GGCGCACCCT GGAAGCTCTG GGGCGAAACC ACCACGCTCT ACACCACCCT GCACGAAGGC 
CGCGACACCA GCGGCCGGGT GATCGGCGCG GGCACGCTGA GCCTGGGCGT GGGCGCACTG 
CTGCGCCTGC TGACCACCGT CGGCGGCACG CCCACGGCAC CGGCGCGCAG CCTGTGGCAG 
CGCATCGGCG CGATCGCGAG CTTCTTCACC TTCTTCAGCG GCGAGCTGGT GCGCACCTAC 
GTGCTGCAGC GTGGGCGCGG GGGGCGTTCA TGA
 
Protein sequence
MATSPPSNAS GVTFRETMAG PFKLGLVDPK AVPDGAPELA MHAVVEIDDI EAFRADPQHK 
ARLSGTIDYP PLGTGLVAPS GVFGLFSPSH DPKLAYMVYE LAFEHAGKPH YLAGKKHVLV 
GAPWKLWGET TTLYTTLHEG RDTSGRVIGA GTLSLGVGAL LRLLTTVGGT PTAPARSLWQ 
RIGAIASFFT FFSGELVRTY VLQRGRGGRS