| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1871 |
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| Symbol | |
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| ID | 6162206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2023277 |
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| End bp | 2024776 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664633 |
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| Product | patatin |
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| Protein accession | YP_001790903 |
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| Protein GI | 171058554 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0785452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGT CGCACACCCC ACCGATCGCC GCCCGCGATG CCGGCGTGCG GCGCGCCCTG
GTGCTCGCCG GTGGCGGCAT GCGGGTGGCC TACCAGGCCG GCGCGGTCAA GGCGCTGTTC
GACGAGGGCC TGCGCTTCAG CCATGCCGAC GGCACCTCCG GCGGCACCAT CAACCTCGCC
GCCCTGCTGT CAGGCCTGAC ACCCGACGAG CTGTGCGCGC GCTGGCGCAG CCTGCCGGTC
ACCGGTTTTG CCGCGCTGCG GCCGCTGCCC GAGTACCTGC GCGGCACCCG CATGAGTGCC
GTCGGCAGCG CTGACGGGCT GATCGAGAAG GTCTACCCGG CGCTCGGCAT CTCGATCGAG
CGCATCCGCG CCGCCACCGG CATCGACGCC GCGTTCAACG TCTGCCGCTT CGACGACAAG
ACCGTCGTGC CGCTGCCGCA GGCGCAGCTC GACATCGCTC GCCTGGTGGC CGGCGTGTCG
CTGCCGATCT TCATGCCGGC GGTGCAGGCC GACGGGCAGA CCTGGACCGA CGCGGTCTGG
ATCAAGGACG CCAACCTGCT CGCCTGCGTC GAGCGGGGCG CGCGCGAGCT CTGGCTGGTC
TGGTGCATCG GCAACACGCC GGTCTACCGC GACGGTGCCT TCAACCAGTA CGTGCACATG
ATCGAGATGA GCGCGCTGGG CGCGCTGCAC GGCGAGCTGG CGAGCATCGC CGACATCAAC
CGGCGCATCG CCGCGGGCGA GACGGTGTTC GGTCACCGCG AGCCGATCGC CGTGCACATC
ATCAGGCCCG AGGTTGCGCT GCCGCTGGAC CCGGACTTCT TCCTGGGCCG CATCGACGCC
GCGACGCTGA TCGACATGGG CTACCGCGAC GCCCGCCGCA CGCTGCGCGC GGGTGCGCCG
GCCGCGTTGG AGCCTGGCGC GACGGCAATG CGTGAGCCCG GTGTCGGCGT GGGCTGGCGC
CTGGCGATGG CAGGCGGTTT CCAGCTCGGC ACGACCGCCC CGCTGACGCT GCACGCCACC
GTCCACATCG AGGACCTCGC GGCCTTCATC ACCGACCCGC GGCACCCGGC GGGGCTGACC
GGCCGGATCG ATTTCGCGCC GCTCGGCCTG GTCGCGCTGC CGGCCGAGTC GGGCCGTTTC
GGCCTGGTCG GCCCGGGCGG CGGAGCGGAC CCGGCACACA TCGCCTACGA ACTGGGGTTC
GTGCACGCCG GCCAGAGTTA TTGCCTGATC GGCAAGAAGC GCTTTCGAAC CGGTGGGCCC
TGGCGCCTGC GCGCCGACCT CACCACGCTG CACACGACGC TGCACAAGGG GGTCGACGCC
AGCGGCGCGG TTGTCGGCAC CGGCGTCCTG CACCTGGGCG TGGCCGATCT GCTGCGGCTG
CTGCGCAGCC TGCACGCCAG CAACGCACCT TCCGCGCGCA CGGGATTCGC TGCGGTCTGG
CGTTTCGTCA AGTTCTTCAC GTGCTGGGTG AGCCGGCGAG GGCGACCACG AGGCGCCTGA
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| Protein sequence | MSASHTPPIA ARDAGVRRAL VLAGGGMRVA YQAGAVKALF DEGLRFSHAD GTSGGTINLA
ALLSGLTPDE LCARWRSLPV TGFAALRPLP EYLRGTRMSA VGSADGLIEK VYPALGISIE
RIRAATGIDA AFNVCRFDDK TVVPLPQAQL DIARLVAGVS LPIFMPAVQA DGQTWTDAVW
IKDANLLACV ERGARELWLV WCIGNTPVYR DGAFNQYVHM IEMSALGALH GELASIADIN
RRIAAGETVF GHREPIAVHI IRPEVALPLD PDFFLGRIDA ATLIDMGYRD ARRTLRAGAP
AALEPGATAM REPGVGVGWR LAMAGGFQLG TTAPLTLHAT VHIEDLAAFI TDPRHPAGLT
GRIDFAPLGL VALPAESGRF GLVGPGGGAD PAHIAYELGF VHAGQSYCLI GKKRFRTGGP
WRLRADLTTL HTTLHKGVDA SGAVVGTGVL HLGVADLLRL LRSLHASNAP SARTGFAAVW
RFVKFFTCWV SRRGRPRGA
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