45 homologs were found in PanDaTox collection
for query gene Gbem_0753 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_0753  nucleotidyltransferase substrate binding protein, HI0074 family  100 
 
 
134 aa  275  2e-73  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0768  nucleotidyltransferase substrate binding protein, HI0074 family  92.54 
 
 
134 aa  256  9e-68  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010655  Amuc_1690  nucleotidyltransferase substrate binding protein, HI0074 family  43.9 
 
 
135 aa  117  6e-26  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.0359217 
 
 
-
 
NC_009483  Gura_1134  HI0074 family nucleotidyltransferase substrate binding protein  42.74 
 
 
139 aa  110  8.000000000000001e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2654  HI0074 family nucleotidyltransferase substrate binding protein  43.08 
 
 
151 aa  108  2.0000000000000002e-23  Marinobacter aquaeolei VT8  Bacteria  normal  0.888693  n/a   
 
 
-
 
NC_007484  Noc_2905  nucleotidyltransferase substrate-binding protein  43.07 
 
 
139 aa  107  4.0000000000000004e-23  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0094  HI0074 family nucleotidyltransferase substrate binding protein  42.86 
 
 
137 aa  106  1e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.257983 
 
 
-
 
NC_010718  Nther_2574  nucleotidyltransferase substrate binding protein, HI0074 family  41.18 
 
 
133 aa  102  1e-21  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0898104  normal 
 
 
-
 
NC_002977  MCA0271  hypothetical protein  42.19 
 
 
139 aa  101  3e-21  Methylococcus capsulatus str. Bath  Bacteria  normal  0.20168  n/a   
 
 
-
 
NC_012560  Avin_02500  Nucleotidyltransferase substrate binding protein, HI0074  40.15 
 
 
142 aa  101  3e-21  Azotobacter vinelandii DJ  Bacteria  normal  0.582316  n/a   
 
 
-
 
NC_014150  Bmur_1350  nucleotidyltransferase substrate binding protein, HI0074 family  38.85 
 
 
139 aa  100  5e-21  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1136  nucleotidyltransferase substrate binding protein, HI0074 family  39.02 
 
 
127 aa  98.6  2e-20  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0806  nucleotidyltransferase substrate binding protein, HI0074 family  42.64 
 
 
247 aa  97.1  8e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1476  nucleotidyltransferase substrate binding protein, HI0074 family  36.84 
 
 
140 aa  97.1  8e-20  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2847  hypothetical protein  38.06 
 
 
139 aa  96.7  1e-19  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1208  HI0074 family nucleotidyltransferase substrate binding protein  40 
 
 
140 aa  95.5  2e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1673  nucleotidyltransferase substrate binding protein  39.68 
 
 
134 aa  94.4  4e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.659864  n/a   
 
 
-
 
NC_007796  Mhun_0490  nucleotidyltransferase substrate binding protein  35.48 
 
 
138 aa  94.7  4e-19  Methanospirillum hungatei JF-1  Archaea  normal  0.26398  normal 
 
 
-
 
NC_010803  Clim_0232  nucleotidyltransferase substrate binding protein, HI0074 family  37.21 
 
 
141 aa  93.6  8e-19  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0050  HI0074 family nucleotidyltransferase substrate binding protein  35.54 
 
 
133 aa  92.4  2e-18  Methanococcus maripaludis C6  Archaea  normal  0.0191135  n/a   
 
 
-
 
NC_010320  Teth514_1039  HI0074 family nucleotidyltransferase substrate binding protein  41.53 
 
 
135 aa  91.3  4e-18  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00506895  n/a   
 
 
-
 
NC_013173  Dbac_1655  nucleotidyltransferase substrate binding protein, HI0074 family  34.59 
 
 
140 aa  90.1  1e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.834334  n/a   
 
 
-
 
NC_012034  Athe_0764  nucleotidyltransferase substrate binding protein, HI0074 family  31.15 
 
 
133 aa  87.8  4e-17  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.537775  n/a   
 
 
-
 
NC_008639  Cpha266_0291  HI0074 family nucleotidyltransferase substrate binding protein  36.3 
 
 
149 aa  87.4  6e-17  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0898  hypothetical protein  34.88 
 
 
136 aa  87  8e-17  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0593  nucleotidyltransferase substrate-binding protein  35.94 
 
 
136 aa  86.7  1e-16  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0068  nucleotidyltransferase substrate binding protein, HI0074 family  36.84 
 
 
199 aa  82.8  0.000000000000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0348  nucleotidyltransferase substrate binding protein, HI0074 family  36.59 
 
 
132 aa  78.6  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.46412  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1773  nucleotidyltransferase substrate binding protein, HI0074 family  41.67 
 
 
129 aa  73.9  0.0000000000007  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4506  HI0074 family nucleotidyltransferase substrate binding protein  42.53 
 
 
146 aa  70.5  0.000000000008  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0839555 
 
 
-
 
NC_009135  MmarC5_0624  HI0074 family nucleotidyltransferase substrate binding protein  27.05 
 
 
130 aa  64.7  0.0000000004  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011146  Gbem_2681  nucleotidyltransferase substrate binding protein, HI0074 family  37.14 
 
 
136 aa  63.9  0.0000000007  Geobacter bemidjiensis Bem  Bacteria  normal  0.485483  n/a   
 
 
-
 
NC_011126  HY04AAS1_1590  nucleotidyltransferase substrate binding protein, HI0074 family  33.33 
 
 
135 aa  62.8  0.000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1569  nucleotidyltransferase substrate binding protein, HI0074 family  32.76 
 
 
124 aa  63.2  0.000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1937  hypothetical protein  30.71 
 
 
133 aa  61.6  0.000000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1380  nucleotidyltransferase substrate binding protein, HI0074 family  34.07 
 
 
152 aa  60.1  0.00000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2026  nucleotidyltransferase substrate binding protein, HI0074 family  29.67 
 
 
150 aa  55.5  0.0000003  Geobacillus sp. WCH70  Bacteria  normal  0.0157738  n/a   
 
 
-
 
NC_007484  Noc_2536  nucleotidyltransferase substrate-binding protein  31.13 
 
 
138 aa  53.9  0.0000007  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00079468  n/a   
 
 
-
 
NC_008346  Swol_0220  nucleotidyltransferase substrate-binding protein, putative  28 
 
 
140 aa  50.8  0.000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3506  HI0074 family nucleotidyltransferase substrate binding protein  32.1 
 
 
141 aa  47.4  0.00007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3593  nucleotidyltransferase substrate binding protein, HI0074 family  32.08 
 
 
133 aa  47  0.00009  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.00156598  n/a   
 
 
-
 
NC_013173  Dbac_0130  nucleotidyltransferase substrate binding protein, HI0074 family  25.93 
 
 
141 aa  44.7  0.0005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3007  HI0074 family nucleotidyltransferase substrate binding protein  30.49 
 
 
139 aa  42.7  0.002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3352  HI0074 family nucleotidyltransferase substrate binding protein  38.1 
 
 
137 aa  40.4  0.008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011060  Ppha_1734  nucleotidyltransferase substrate binding protein, HI0074 family  32 
 
 
140 aa  40.4  0.008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>