8 homologs were found in PanDaTox collection
for query gene Cpin_5441 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_5441  RNA polymerase, sigma-24 subunit, ECF subfamily  100 
 
 		 190 aa  386  1e-106  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_6665  hypothetical protein  50.82 
 
 		 383 aa  184  5e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013061  Phep_0188  RNA polymerase sigma factor, sigma-70 family  24.14 
 
 		 192 aa  55.5  0.0000004  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  0.630653 
 
 
-
 
NC_013730  Slin_4193  RNA polymerase, sigma-24 subunit, ECF subfamily  20.57 
 
 		 200 aa  51.2  0.000009  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_5443  RNA polymerase, sigma-24 subunit, ECF subfamily  21.11 
 
 		 188 aa  47  0.0002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.16268  normal  1 
 
 
-
 
NC_009441  Fjoh_1133  ECF subfamily RNA polymerase sigma-24 factor  24.85 
 
 		 195 aa  44.7  0.0007  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
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NC_013132  Cpin_0929  RNA polymerase, sigma-24 subunit, ECF subfamily  22.5 
 
 		 192 aa  44.7  0.0007  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
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NC_013037  Dfer_0159  RNA polymerase, sigma-24 subunit, ECF subfamily  21.14 
 
 		 196 aa  44.7  0.0008  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.646556 
 
 
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