| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5443 |
|---|
| Symbol | |
|---|
| ID | 8361620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 6953875 |
|---|
| End bp | 6954441 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644967589 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003125073 |
|---|
| Protein GI | 256424420 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.16268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTATA AGAACAGCCA GGAATTAACA GACGAAGAAC TGCTGGAACG GTATAAAGCC
GATGAAAACA GCAATTGGGT AGGCATCCTG TTTGACAGGT ATGCGATCCT GTTATTGGGT
ATGTGTATGA AATACCTTAA AAATGAAGAG GATGCAAGAG ACAGTGTACA ACAGATATTT
TTAAAAGTAT TGGCAGATAT CAACAAGCAC AAAGTGCAGT ATTTCAGGGC CTGGATCTAC
CAGGTGAGCA AGAATCATTG CCTGATGCAG TTAAGACATA AGAGTCAGGT GAAACAGGAG
GAAGTCAGTG AGAAACATCT CAATGATCCC GGAGAACCGG AAGAAGATAA AGCCCGATTC
GTAGAAAAGG ATAACTTGCT GGAAAATATG CAACATGCCC TGGAGCAGTT AAACCCGGAG
CAGCGTGTCT GTGTCAAACT TTTTTATCTG CAAAAACGCT CTTACCAGGA TATTACAGAC
GAGACGGGGT ATACCTTGTT ACAGGTGAAG AGTTATATTC AGAATGGAAA GCGTAACCTG
AAGCTCCTGC TGAGCAAACA GGGATAG
|
|---|
| Protein sequence | MNYKNSQELT DEELLERYKA DENSNWVGIL FDRYAILLLG MCMKYLKNEE DARDSVQQIF
LKVLADINKH KVQYFRAWIY QVSKNHCLMQ LRHKSQVKQE EVSEKHLNDP GEPEEDKARF
VEKDNLLENM QHALEQLNPE QRVCVKLFYL QKRSYQDITD ETGYTLLQVK SYIQNGKRNL
KLLLSKQG
|
|---|
| |