13 homologs were found in PanDaTox collection
for query gene Swit_5008 on replicon NC_009508
Organism: Sphingomonas wittichii RW1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009508  Swit_5008  type IV secretory pathway, VirB3 family protein  100 
 
 		 111 aa  224  3e-58  Sphingomonas wittichii RW1  Bacteria  normal  0.118647  normal  0.169253 
 
 
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NC_009475  BBta_p0256  Type IV secretory pathway AvhB3 protein  41 
 
 		 112 aa  81.6  0.000000000000003  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.990445 
 
 
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NC_009432  Rsph17025_4377  type IV secretory pathway, VirB3 family protein  42.59 
 
 		 109 aa  81.6  0.000000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
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NC_008242  Meso_4347  type IV secretory pathway, VirB3-like  43.75 
 
 		 112 aa  77.4  0.00000000000006  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
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NC_009667  Oant_0676  type IV secretory pathway VirB3 family protein  41.49 
 
 		 113 aa  75.1  0.0000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
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NC_009717  Xaut_5087  type IV secretory pathway VirB3 family protein  39.58 
 
 		 112 aa  71.6  0.000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
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NC_011982  Avi_8225  type IV secretion system protein VirB3  39.22 
 
 		 108 aa  67.4  0.00000000006  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
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NC_009621  Smed_6160  type IV secretion system protein VirB3  34.95 
 
 		 108 aa  63.5  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.0419934  normal  1 
 
 
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NC_009469  Acry_3522  type IV secretion system protein VirB3  39.22 
 
 		 110 aa  60.5  0.000000008  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
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NC_004311  BRA0067  type IV secretion system protein VirB3  29.41 
 
 		 116 aa  42  0.003  Brucella suis 1330  Bacteria  decreased coverage  0.00447561  n/a   
 
 
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NC_009504  BOV_A0061  type IV secretion system protein VirB3  29.41 
 
 		 128 aa  41.6  0.004  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
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NC_010509  Mrad2831_6324  type IV secretory pathway VirB3 family protein  28 
 
 		 113 aa  41.2  0.005  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal  1 
 
 
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NC_007798  NSE_0864  type IV secretion system protein VirB3  28.41 
 
 		 98 aa  40.8  0.007  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  1  n/a   
 
 
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