20 homologs were found in PanDaTox collection
for query gene SO_1732 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004347  SO_1732  cold shock domain-contain protein  100 
 
 		 224 aa  458  9.999999999999999e-129  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
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NC_002947  PP_0636  cold shock DNA-binding domain-containing protein  34.92 
 
 		 246 aa  98.2  8e-20  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
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NC_011146  Gbem_2739  cold-shock DNA-binding domain protein  41.94 
 
 		 68 aa  47  0.0002  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000080188  n/a   
 
 
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NC_009483  Gura_3711  cold-shock DNA-binding domain-containing protein  43.75 
 
 		 66 aa  47  0.0003  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000509741  n/a   
 
 
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NC_012918  GM21_1502  cold-shock DNA-binding domain protein  41.94 
 
 		 68 aa  45.8  0.0005  Geobacter sp. M21  Bacteria  n/a    normal  0.683183 
 
 
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NC_013517  Sterm_3013  cold-shock DNA-binding domain protein  43.75 
 
 		 65 aa  45.4  0.0007  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.00000213425  n/a   
 
 
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NC_010816  BLD_0001  cold shock protein  39.39 
 
 		 79 aa  43.9  0.002  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.0000000455048  n/a   
 
 
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NC_012034  Athe_0754  cold-shock DNA-binding domain protein  40.35 
 
 		 66 aa  44.3  0.002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
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NC_002939  GSU1905  cold shock domain-contain protein  41.94 
 
 		 66 aa  44.3  0.002  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00000974395  n/a   
 
 
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NC_007644  Moth_0226  cold-shock DNA-binding protein family protein  38.46 
 
 		 65 aa  43.1  0.003  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000000000017804  normal  1 
 
 
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NC_011830  Dhaf_4749  cold-shock DNA-binding domain protein  38.1 
 
 		 65 aa  43.5  0.003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000498779  n/a   
 
 
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NC_007517  Gmet_1266  cold-shock DNA-binding protein family protein  39.06 
 
 		 66 aa  43.5  0.003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  2.7573e-18  decreased coverage  0.00000000000100442 
 
 
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NC_009708  YpsIP31758_2959  cold-shock DNA-binding domain-containing protein  29.23 
 
 		 160 aa  42.7  0.004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.248983  n/a   
 
 
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NC_010159  YpAngola_A1859  cold-shock DNA-binding domain-containing protein  29.23 
 
 		 159 aa  42.7  0.004  Yersinia pestis Angola  Bacteria  normal  0.2054  normal  0.111981 
 
 
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NC_010465  YPK_3032  cold-shock DNA-binding domain-containing protein  29.23 
 
 		 159 aa  42.7  0.004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0731072  n/a   
 
 
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NC_008009  Acid345_4183  cold-shock DNA-binding protein family protein  40.32 
 
 		 67 aa  42.4  0.006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0862888  normal  0.391924 
 
 
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NC_013515  Smon_0928  cold-shock DNA-binding domain protein  39.68 
 
 		 65 aa  42.4  0.006  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
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NC_008609  Ppro_0557  cold-shock DNA-binding domain-containing protein  40.62 
 
 		 67 aa  42  0.007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0146749  n/a   
 
 
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NC_012917  PC1_1462  cold-shock DNA-binding domain protein  32.35 
 
 		 160 aa  41.6  0.009  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.4902  n/a   
 
 
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NC_012918  GM21_0191  cold-shock DNA-binding domain protein  38.46 
 
 		 66 aa  41.6  0.009  Geobacter sp. M21  Bacteria  n/a    unclonable  8.97537e-36 
 
 
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