8 homologs were found in PanDaTox collection
for query gene Rpal_3052 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_3052  hypothetical protein  100 
 
 
303 aa  616  1e-175  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.833159  n/a   
 
 
-
 
NC_007510  Bcep18194_A5241  hypothetical protein  37.36 
 
 
151 aa  59.7  0.00000005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2159  replication protein  33.72 
 
 
274 aa  59.7  0.00000006  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000201859  n/a   
 
 
-
 
NC_011353  ECH74115_1152  hypothetical protein  36.99 
 
 
400 aa  58.9  0.00000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.303869 
 
 
-
 
NC_010172  Mext_1874  hypothetical protein  33.73 
 
 
315 aa  51.6  0.00001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3957  hypothetical protein  33.33 
 
 
264 aa  44.3  0.002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3493  hypothetical protein  34.25 
 
 
224 aa  43.9  0.004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2904  hypothetical protein  35.62 
 
 
332 aa  43.1  0.006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0650745  normal  0.240058 
 
 
-
 
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