17 homologs were found in PanDaTox collection
for query gene Rleg2_4501 on replicon NC_011368
Organism: Rhizobium leguminosarum bv. trifolii WSM2304



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011368  Rleg2_4501  helix-turn-helix domain protein  100 
 
 
261 aa  540  1e-153  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0769508  normal 
 
 
-
 
NC_009636  Smed_2182  putative transcriptional regulator  62.75 
 
 
264 aa  346  2e-94  Sinorhizobium medicae WSM419  Bacteria  normal  0.293373  normal  0.188357 
 
 
-
 
NC_008044  TM1040_0390  hypothetical protein  37.35 
 
 
266 aa  140  1.9999999999999998e-32  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0788  transcriptional regulator  30.2 
 
 
270 aa  129  5.0000000000000004e-29  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2990  hypothetical protein  33.91 
 
 
272 aa  117  1.9999999999999998e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0540  Cro/CI family transcriptional regulator  33.04 
 
 
269 aa  115  8.999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  0.781184  normal 
 
 
-
 
NC_008463  PA14_35470  hypothetical protein  33.48 
 
 
272 aa  115  1.0000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.030822  hitchhiker  0.00555849 
 
 
-
 
NC_010501  PputW619_0552  Cro/CI family transcriptional regulator  31.72 
 
 
269 aa  112  5e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.213682 
 
 
-
 
NC_009512  Pput_0531  Cro/CI family transcriptional regulator  31.72 
 
 
269 aa  111  1.0000000000000001e-23  Pseudomonas putida F1  Bacteria  normal  0.532711  normal 
 
 
-
 
NC_002947  PP_0497  Cro/CI family transcriptional regulator  31.72 
 
 
269 aa  110  2.0000000000000002e-23  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0134  helix-turn-helix domain-containing protein  31 
 
 
272 aa  108  1e-22  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2650  transcriptional regulator  25.73 
 
 
271 aa  99  8e-20  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00061055  normal  0.037615 
 
 
-
 
NC_008060  Bcen_1526  hypothetical protein  27.38 
 
 
322 aa  94.4  2e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.818031  n/a   
 
 
-
 
NC_008544  Bcen2424_6303  hypothetical protein  27.38 
 
 
322 aa  94.4  2e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.519477 
 
 
-
 
NC_010512  Bcenmc03_6961  XRE family transcriptional regulator  27 
 
 
275 aa  92.4  7e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.512084  normal 
 
 
-
 
NC_008686  Pden_1093  XRE family transcriptional regulator  23.88 
 
 
280 aa  64.3  0.000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0872  XRE family transcriptional regulator  45.28 
 
 
266 aa  50.1  0.00004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.336664 
 
 
-
 
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