25 homologs were found in PanDaTox collection
for query gene RSP_2003 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_2003  YibQ protein  100 
 
 
477 aa  882    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0713  protein of unknown function DUF610, YibQ  98.11 
 
 
477 aa  865    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.106897 
 
 
-
 
NC_009428  Rsph17025_3100  protein of unknown function DUF610, YibQ  67.35 
 
 
474 aa  497  1e-139  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.482239 
 
 
-
 
NC_007802  Jann_1881  protein of unknown function DUF610, YibQ  45.22 
 
 
575 aa  174  3.9999999999999995e-42  Jannaschia sp. CCS1  Bacteria  normal  normal  0.176772 
 
 
-
 
NC_008044  TM1040_1142  hypothetical protein  40.91 
 
 
519 aa  155  1e-36  Ruegeria sp. TM1040  Bacteria  normal  normal  0.0823689 
 
 
-
 
NC_009952  Dshi_1797  hypothetical protein  37.25 
 
 
608 aa  130  4.0000000000000003e-29  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.0000479521  normal  0.132264 
 
 
-
 
NC_008609  Ppro_2408  protein of unknown function DUF610, YibQ  27.85 
 
 
342 aa  62.4  0.00000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000297515  n/a   
 
 
-
 
NC_011769  DvMF_3159  protein of unknown function DUF610 YibQ  29.56 
 
 
543 aa  56.2  0.000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0142078 
 
 
-
 
NC_010172  Mext_2286  protein of unknown function DUF610 YibQ  30.5 
 
 
418 aa  56.6  0.000001  Methylobacterium extorquens PA1  Bacteria  normal  0.665446  normal  0.0682308 
 
 
-
 
NC_011757  Mchl_2561  protein of unknown function DUF610 YibQ  30.12 
 
 
401 aa  55.1  0.000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0378408 
 
 
-
 
NC_008751  Dvul_0924  protein of unknown function DUF610, YibQ  30.05 
 
 
461 aa  53.5  0.000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.453399 
 
 
-
 
NC_007519  Dde_1438  hypothetical protein  28.3 
 
 
488 aa  52  0.00002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0614604  n/a   
 
 
-
 
NC_010725  Mpop_2243  protein of unknown function DUF610 YibQ  28.35 
 
 
399 aa  52  0.00002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.192281 
 
 
-
 
NC_002939  GSU1769  hypothetical protein  26.61 
 
 
290 aa  50.1  0.00009  Geobacter sulfurreducens PCA  Bacteria  normal  0.0298619  n/a   
 
 
-
 
NC_010338  Caul_4726  protein of unknown function DUF610 YibQ  29.74 
 
 
395 aa  49.7  0.0001  Caulobacter sp. K31  Bacteria  normal  normal  0.0150774 
 
 
-
 
NC_011894  Mnod_4734  protein of unknown function DUF610 YibQ  29.67 
 
 
404 aa  48.1  0.0004  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.00807968  n/a   
 
 
-
 
NC_013522  Taci_0491  protein of unknown function DUF610 YibQ  30.26 
 
 
325 aa  47.8  0.0005  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1850  protein of unknown function DUF610, YibQ  22.79 
 
 
320 aa  47  0.0007  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000290484  normal 
 
 
-
 
NC_008554  Sfum_3062  protein of unknown function DUF610, YibQ  26.36 
 
 
430 aa  46.2  0.001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0317444 
 
 
-
 
NC_009719  Plav_1471  protein of unknown function DUF610 YibQ  26.7 
 
 
426 aa  45.8  0.002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2567  protein of unknown function DUF610, YibQ  25.45 
 
 
264 aa  44.7  0.003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.245403  hitchhiker  0.00802538 
 
 
-
 
NC_010814  Glov_1919  protein of unknown function DUF610 YibQ  24.73 
 
 
334 aa  44.7  0.004  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000324213  n/a   
 
 
-
 
NC_013173  Dbac_2867  protein of unknown function DUF610 YibQ  25.24 
 
 
433 aa  44.3  0.004  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00589273  n/a   
 
 
-
 
NC_010465  YPK_4143  protein of unknown function DUF610 YibQ  24.54 
 
 
336 aa  43.9  0.006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0073  divergent polysaccharide deacetylase  24.54 
 
 
336 aa  43.9  0.006  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
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