17 homologs were found in PanDaTox collection
for query gene RPC_4029 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_4029  hypothetical protein  100 
 
 
73 aa  149  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.183485 
 
 
-
 
NC_009485  BBta_7002  hypothetical protein  68 
 
 
78 aa  99.4  2e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.822642  normal  0.643564 
 
 
-
 
NC_011004  Rpal_4705  hypothetical protein  66.67 
 
 
70 aa  97.1  7e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1387  hypothetical protein  77.59 
 
 
73 aa  93.6  7e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1367  hypothetical protein  75.86 
 
 
72 aa  92  2e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3571  hypothetical protein  71.43 
 
 
73 aa  84  6e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2772  hypothetical protein  78.18 
 
 
72 aa  84  7e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5007  hypothetical protein  58.54 
 
 
91 aa  53.5  0.000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0351742  normal  0.0710612 
 
 
-
 
NC_010725  Mpop_3028  hypothetical protein  55 
 
 
73 aa  50.8  0.000006  Methylobacterium populi BJ001  Bacteria  normal  0.181038  normal 
 
 
-
 
NC_010511  M446_2726  hypothetical protein  46.15 
 
 
72 aa  50.8  0.000006  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.11784 
 
 
-
 
NC_011757  Mchl_3130  hypothetical protein  51.06 
 
 
73 aa  49.3  0.00002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.81644 
 
 
-
 
NC_011894  Mnod_4398  hypothetical protein  50 
 
 
73 aa  46.2  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.519586  n/a   
 
 
-
 
NC_010172  Mext_2904  hypothetical protein  48.89 
 
 
49 aa  46.2  0.0001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0285  hypothetical protein  44.23 
 
 
94 aa  44.7  0.0004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.180961 
 
 
-
 
NC_010505  Mrad2831_1363  hypothetical protein  47.37 
 
 
130 aa  43.1  0.001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00274134 
 
 
-
 
NC_010338  Caul_0090  hypothetical protein  45.95 
 
 
61 aa  40.4  0.009  Caulobacter sp. K31  Bacteria  normal  0.81517  normal  0.0401934 
 
 
-
 
NC_010505  Mrad2831_1033  ECF subfamily RNA polymerase sigma-24 factor  43.59 
 
 
246 aa  40  0.01  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0490055 
 
 
-
 
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