7 homologs were found in PanDaTox collection
for query gene Pmen_3988 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_3988  hypothetical protein  100 
 
 		 109 aa  218  1.9999999999999999e-56  Pseudomonas mendocina ymp  Bacteria  normal  0.0146108  normal  0.105596 
 
 
-
 
NC_002947  PP_3031  pyocin R2_PP, transcriptional activator prtN  58.06 
 
 		 105 aa  110  9e-24  Pseudomonas putida KT2440  Bacteria  normal  0.453113  normal  0.0918719 
 
 
-
 
NC_004578  PSPTO_3425  transcriptional regulator, putative  54.64 
 
 		 107 aa  106  1e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.0000176936  n/a   
 
 
-
 
NC_008463  PA14_07950  transcriptional regulator PrtN  50 
 
 		 104 aa  89.4  2e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0561092  hitchhiker  0.00216354 
 
 
-
 
NC_009656  PSPA7_0754  transcriptional regulator PrtN  50 
 
 		 104 aa  87  8e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0155188  n/a   
 
 
-
 
NC_009049  Rsph17029_2021  hypothetical protein  33.8 
 
 		 87 aa  41.2  0.005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_1680  hypothetical protein  33.33 
 
 		 97 aa  40.4  0.009  Sinorhizobium medicae WSM419  Bacteria  normal  0.124193  normal  0.187707 
 
 
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