17 homologs were found in PanDaTox collection
for query gene Pmen_0134 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_0134  helix-turn-helix domain-containing protein  100 
 
 
272 aa  563  1.0000000000000001e-159  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0552  Cro/CI family transcriptional regulator  73.9 
 
 
269 aa  409  1e-113  Pseudomonas putida W619  Bacteria  normal  normal  0.213682 
 
 
-
 
NC_008463  PA14_35470  hypothetical protein  72.79 
 
 
272 aa  395  1e-109  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.030822  hitchhiker  0.00555849 
 
 
-
 
NC_009656  PSPA7_2990  hypothetical protein  72.06 
 
 
272 aa  391  1e-108  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0497  Cro/CI family transcriptional regulator  74.26 
 
 
269 aa  389  1e-107  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0531  Cro/CI family transcriptional regulator  74.26 
 
 
269 aa  389  1e-107  Pseudomonas putida F1  Bacteria  normal  0.532711  normal 
 
 
-
 
NC_010322  PputGB1_0540  Cro/CI family transcriptional regulator  74.26 
 
 
269 aa  386  1e-106  Pseudomonas putida GB-1  Bacteria  normal  0.781184  normal 
 
 
-
 
NC_008700  Sama_0788  transcriptional regulator  45.1 
 
 
270 aa  229  3e-59  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2650  transcriptional regulator  42.91 
 
 
271 aa  207  2e-52  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00061055  normal  0.037615 
 
 
-
 
NC_009636  Smed_2182  putative transcriptional regulator  33.48 
 
 
264 aa  124  1e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.293373  normal  0.188357 
 
 
-
 
NC_008044  TM1040_0390  hypothetical protein  33.46 
 
 
266 aa  124  2e-27  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6961  XRE family transcriptional regulator  29.89 
 
 
275 aa  119  4.9999999999999996e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.512084  normal 
 
 
-
 
NC_008544  Bcen2424_6303  hypothetical protein  29.89 
 
 
322 aa  117  9.999999999999999e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.519477 
 
 
-
 
NC_008060  Bcen_1526  hypothetical protein  29.89 
 
 
322 aa  117  9.999999999999999e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.818031  n/a   
 
 
-
 
NC_011368  Rleg2_4501  helix-turn-helix domain protein  31 
 
 
261 aa  112  6e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0769508  normal 
 
 
-
 
NC_008686  Pden_1093  XRE family transcriptional regulator  30.21 
 
 
280 aa  95.5  7e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0872  XRE family transcriptional regulator  29.41 
 
 
266 aa  70.9  0.00000000002  Ruegeria sp. TM1040  Bacteria  normal  normal  0.336664 
 
 
-
 
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