16 homologs were found in PanDaTox collection
for query gene Pfl01_R30 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007492  Pfl01_R30  SRP RNA; RNA component of signal recognition particle  100 
 
 		 117 bp  232  2e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.331058  normal  1 
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  94.87 
 
 		 117 bp  184  3e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_009512  Pput_R0047  SRP RNA; RNA component of signal recognition particle  89.11 
 
 		 117 bp  113  1.0000000000000001e-23  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0796172 
 
 
-
 
NC_010322  PputGB1_R0076  SRP RNA; RNA component of signal recognition particle  89.11 
 
 		 117 bp  113  1.0000000000000001e-23  Pseudomonas putida GB-1  Bacteria  normal  0.341917  normal  0.494502 
 
 
-
 
NC_010501  PputW619_R0058    89.11 
 
 		 117 bp  113  1.0000000000000001e-23  Pseudomonas putida W619  Bacteria  normal  0.334367  normal  1 
 
 
-
 
NC_012560  Avin_65170  bacterial signal recognition particle RNA SRP_bact  86.67 
 
 		 98 bp  83.8  0.000000000000009  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_R0047  SRP RNA; RNA component of signal recognition particle  84.21 
 
 		 118 bp  69.9  0.0000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.292586  normal  1 
 
 
-
 
NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  84.91 
 
 		 117 bp  67.9  0.0000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
-
 
NC_011662  Tmz1t_R0010  SRP RNA; RNA component of signal recognitionparti cle  97.3 
 
 		 106 bp  65.9  0.000000002  Thauera sp. MZ1T  Bacteria  normal  0.33139  n/a   
 
 
-
 
NC_008709  Ping_R0084  SRP RNA  100 
 
 		 116 bp  60  0.0000001  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000267785  normal  0.896198 
 
 
-
 
NC_008025  Dgeo_R0056  SRP RNA; RNA component of signal recognition particle  96.88 
 
 		 106 bp  56  0.000002  Deinococcus geothermalis DSM 11300  Bacteria  hitchhiker  0.0000625085  normal  0.583061 
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  91.89 
 
 		 101 bp  50.1  0.0001  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  91.89 
 
 		 104 bp  50.1  0.0001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_007912  Sde_R0021  SRP RNA; RNA component of signal recognitionparticle  100 
 
 		 110 bp  46.1  0.002  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_R0007  SRP RNA; RNA component of signal recognition particle  91.43 
 
 		 110 bp  46.1  0.002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.24199  n/a   
 
 
-
 
NC_014212  Mesil_R0019  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 107 bp  46.1  0.002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0274413 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>