13 homologs were found in PanDaTox collection
for query gene Cpin_3186 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3186  hypothetical protein  100 
 
 
1079 aa  2213    Chitinophaga pinensis DSM 2588  Bacteria  normal  0.150052  normal  0.187937 
 
 
-
 
NC_013132  Cpin_4387  hypothetical protein  24.06 
 
 
1056 aa  224  4.9999999999999996e-57  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.95296  hitchhiker  0.00457818 
 
 
-
 
NC_013132  Cpin_4640  hypothetical protein  22.69 
 
 
1322 aa  169  2.9999999999999998e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.963654  normal  0.0174413 
 
 
-
 
NC_013132  Cpin_1394  YD repeat protein  28.22 
 
 
1129 aa  162  3e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3006  YD repeat protein  34.23 
 
 
1263 aa  146  2e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4144  YD repeat protein  28.32 
 
 
1092 aa  127  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.794308  normal  0.283099 
 
 
-
 
NC_009441  Fjoh_2667  YD repeat-containing protein  25.45 
 
 
1152 aa  122  3e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.202168  n/a   
 
 
-
 
NC_009441  Fjoh_3730  YD repeat-containing protein  25.45 
 
 
1152 aa  122  3e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0100146  n/a   
 
 
-
 
NC_013061  Phep_1097  YD repeat protein  27.09 
 
 
1229 aa  120  9.999999999999999e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.791752  unclonable  0.0000000000274764 
 
 
-
 
NC_013061  Phep_1049  YD repeat protein  27.17 
 
 
1084 aa  119  1.9999999999999998e-25  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2075  YD repeat protein  29.49 
 
 
1129 aa  103  2e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_7100  YD repeat protein  24.69 
 
 
1065 aa  98.2  7e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2121  YD repeat protein  26.09 
 
 
1837 aa  80.9  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.0873035  normal  0.943874 
 
 
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