| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2121 |
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| Symbol | |
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| ID | 8725859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | - |
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| Start bp | 2564259 |
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| End bp | 2569772 |
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| Gene Length | 5514 bp |
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| Protein Length | 1837 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | |
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| Product | YD repeat protein |
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| Protein accession | YP_003386954 |
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| Protein GI | 284037024 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0873035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.943874 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT TAAATGTGCC TTCTAGGGAT TCCTTTGTGC CTTTACAAAG TAGAATTGAT
CAATTTATTA TCTATATGGG TATTTTCTAC CTGTTTTTAT TTAACTCAGG TGGTACATTG
TGGGCACAAT TTCAAAGACC AGATGTATCG TTACCTAGTC CAAATGCTGC TAGTTTAGGT
TTATATGGTG AGGTGCCTGT TTCGCTATAT ACTGGCACAC CGAATATCGA CATTCCATTG
TATACTATAC AGGAAGGAAA GATTAATGTC CCTATCACAT TAAGTTACCA TGCTTCGGGT
GTACGTGTGA ACCAACATCC AGGATGGGTA GGCCTAAATT GGAACCTCAA CGCTGGCGGG
GCTATTACCC GTAAGATGAA AGGGGTATTA GATGAATTTA ATCAGAGTGG TATTGCTGGT
TATTATTTTA ACCATGATAT TCTAAATGGA CCTAACTGGG AGACTAAAGA GTATGCAAAA
CAGATTGTCC AATACGCTAC AGACACTGAT CCCGATGAGT TTAATTTTAA CTTCATGGGA
CTATCAGGAA GCTTTTATTT AAATGCAAAA GGAAATTGGG CAGTTCGGTC TGACTCAAAG
ATTAGCGTTA CTGTTGACAG TAATTTAATG GATGTTCCTC CAGATCTTGA AAAAACCTGT
GATGCTGATT TTTTTGATGT TACTTTCCAA ACTCCAACAG GCCATAATCC TAAGACTTTT
GGCAAATTTA CTTTAACTAC AGCAGACGGA ACTCGATACA TTTTTGGCGG AACAACCAAT
GCAATAGAGT ATTCAATGAC CTTTTTTGGA CAAAGCTTTT CACAATCACC TCAAGTGAAA
GATATTTGGA CGGCTAACAC GTGGTATCTA AAACAAATAA TAACTCCACA AGGGCAAGAA
ATAGTTTTTA ACTACAGCGC AGATGCTTGT AGTAGCGGAA AGTTTGTTGC TTCTTTCTAT
AATTCATACA TCACAGGATA TTTTAATAGT AATTCAGGTA ATCCAGGATT CCTTAATCTG
ACTTCGGGTT GTTCAGGATA TTCATTAGGT TCACCTAGTG GTTATGTTGC CGGCGTGTTA
ACAAGGCCGG TATATTTGGA TAATATAACG AGTGATAAAG CCTCTATTAG TTTTACGCGC
TCGAGTACAA ATGAGCTTAA ATATGAAGCA AGAATACTAA AATCATACTT CAATCAACCA
GGGGGTGGTT TAAGTAATGT TCCTACATCT ATTTTCCCGT TTTTAAATTA TAATGGTGTT
TTAGGCAATT CTACAACTAC TCCTGAAGGC CGAATAAGAG CTTTATTAGA CAGGCTTGTA
TGGAAACAAT TGGATCAAAT TAAAGTCACT AATAAAGATG GATTAATTGT TAATAAGATA
AATTTTGAAT ACAGCAATGA CAATACCAAA AGGCTCACTC TTAACAGAGT GAAGTACTTG
TCAAATAATG ATGCCAACTG CATGAATAAA TACGATTTTG ATTATTATAC AGATTATTCT
TTGCCTAATT ACTTAGATTC ATTAGATAAA ACGGATCATT GGGGATTTTT CAATGGTCGT
GAATATAATA TTAATACATT ACCAACTACT GGTTTCTCGT ATTATGAAAC ACAAAAAGCT
TCATCTACTA ATATTCAATT GCTCCGAAGT GGTAGTTTGA AGAAAATAAC ATATCCAACT
GGTGGATATA CTGAATTCGA TTTTGAAAAA CATACCTCAA AAAAGTATCA AGCTATAAAT
CGGGATGCAA GCATCAACTT GCTTACCGAT TCAACTCAGG TAGTAGGTGG AATTCGCATT
AAAACAATAA CTAATAAAGA AAATAGTAAC GCAGTTTTAT CAACTAAGCA GTATAATTAT
TTGCTTTCAG ATGGATCATC TAGTGGTATC TCATCTGGCA AACCGGTTTA TGGTACAGGC
GCTCACAAAA TGTCTGTTTG CAATGAGACA GGTTCAATTA CAATGGATAT TTATTCACTA
CAAAGTCTTT TGCCAACAAG TGTGAATTCA CATGGAACAC ACATTGGATA CAGTAGAGTA
GTCGAAAAAA ATAGTGATAA TAGCTATAAA GTGTATACGT ACACAAATTA CGAGTCTCCG
GACGGGTCTA CTCATTTAGA TTTACCGGTA GCGACTGCTT TACGTATTGA AGGCAGTGAT
GCTAGTCGGT ATGAGCCTTT TATTGATAAA TCATTCGAGC GAGGGTTACT TTTGAGCGAG
GAATCGTATG ATGCTCAGCA GAGACCTGTT TTAAGAAAGG TCAATACATA TCGTGCTTTG
TCTAATGAGT TTGTTGAAGG TATGTACAGA AATAGTATTG CTGTATGTCC TGGTTCTGGC
CGTTTTGGAT GTTCTGGTTT TCCTTATCGT ATTTACACGT ATCAATATAA ACTTGATAGA
GAAGAAGTTT ACACTTACAC TCAAGGCCAA AGCCAAAATG CAGCAGATAG AATAGAATAT
ATTGCTTACA ATTCAATAGG ATTACCTACT GAAATCAAAT CAACAAGAAA TTCAAAAATT
ACAGTTACTA AGAATAAGTA TTCAATTGAC TATCCATTAT CTGGAACTAT CGCAACTGTC
GATGAACCTA GTAAAGCTAT TCGCTTGATG CAATCGAATA ACATGACAGG AATGTTAATC
GAACAGCAAA TATGGAGTAA TGATAATGGA ACATTGGGAA TGGTAGATGG TTTTATAAAT
TTATATCGAT CATATTCTGC AACAAGCGGT TATGTAAATA TTAAGCCAGA AAAAACGTTG
CAATACGCTG TTTTAACGTC TAACACTAGC GTAATCACTT CATCAATCTC TTCGAATGGC
TCAGGTTATA TTTTTAATTA CGATCCAGAT TATAAAAAGG TTGTTGTGAA GTTCGATGAT
CCTATTAATG CATATACAGT TCGAGGAGAG CCGATTAAAT TTACAGACAA TAACAATCTA
ATTACATCCA TAACTTACTA TGGAGGATCC AAAATAGGTC TAATTGCTTC TAAGACTATT
AATTCTCAGA CTACGGTATA CGATTATAAA CCCTTAGTAG GAATAAGTTC AGTAAAAGAC
CCTAATAATA TTAACACTTT GTATGAATAC GATGGATTTA ACAGGTTGCT CACAGTTAAG
GACAATTGGA ACAACTTACT TCAATCAAAT TCATATAATT TGGTTAATAG TTCAGGTTGT
AGTACACCTA AATTAGCAGC TGAGCCACTT ATTACTCCAT TTCTTTCTGC TATTGGACAA
TACTCTCGGG TACTGATTGT TGGGAATAGT ATTACCAAAT TGGTAGCTCA GTCCGGTTCG
GATGGCTGGC AGTCACCAGC TCTTACTGCT GCAGGGGGCT GGGGCCGAGC GTCTTCAACG
CAAGCGAAAG ATTTTGCCCA TATTCTTGAA AGCCGCTTCA AACAACTCAA TCCCAACGCG
CAGGTTTTAC CATTGTGGGA AGCGCCCTTC GAACGGGATT ATATTAATAA TAACCCGGCA
GGATGGCTAA CATATGACTA TTCTGCTCTT CAAACCCGTA TTGCAAATGG ATTTAGTGCC
TCTCCAAGTA AACCGGATTT GATTATTATT CGGTTAGGAG AAAATGTGGT TAACTCTCAA
GTTGAGCCGA ATAATTTTAA AGGAGCATTA AATACTTTAA TTAATAAAGT CATGGAAGTG
AGCACTCCAG GAGCTAAGGT AATTTTAACT AATTCAATGT GGCCAGATCA ACCGTTGGCC
AACGTTAAAA TCCAGGAAGT AGCCAACGAA CGTGGTTTTC CATTCGTGGA CTTGAGTGAT
ATGATATCCA ACCCTGTTTT TTTGGCAGGA AATGACCCCG TTACCTTGGC GGCCTTTCCT
AATAATACCG GTGATCGACA TCCAGGCGAC GCTGGCATGC TAGAGATAGC GGATCGGATA
TGGAGCAAAG TTCGAAACAC AAATTTAGCA TCAAACGTAG GTGGTAATAT AACCAAAGTC
CGCCTATACC CACGTACGGA TTGCTGTATT GACCGTATAG TTGGTAGTGT TATCCAAGGG
TCAAATGATA TCACAAATCC TAGTTCATGG ACTACGTTAA CCACGATTAA TGAAACGCCA
ATTGTTGGTT GGAATGACTA TTCTGTGCGA ACAACTACCT CTTGGCGGTA CTTACGTTTT
TTAGCTGGCC CAAATTGCTA TGGAGATCTA AAAGAACTAG AGTTTTATAA TGGTAGTGTG
AAATTAGTTG GTTCAAAATT TGGCTCTACA ACTGCTTTTA ACAACGATCA AACTAACTAC
AGCTTTAATG TGGCTTTTGA TGGGCAGGTA GGAGCAACTT TTTGGCAGGG TACAGGCCCT
GGTCTTCAAA ACTTTGCAGG TTTGGATCTG GGATCGAGTT GCACCGCTCT GACGGCCAGT
GTGCTTAGCC CGGCCAACAG TGCTACCCTG GTGGGCACGG CCAGTACGGT GACGGCGGGT
CGGGTGATCT GCCCGGTCAG TGTGACCACC TGCGCTCCCA GCGGCACCAC CATCACTCAA
GTGGAAATCT GGGCCAAGAC TTCGGCGGGC ACTTTCCCCA ACCGGATGGG CTATGCTGTG
GCTGATGCCA GTCGACCAGG GACCTACACC CTGTCAGCCA GTGAGGGAAC GGCCAACGGC
AAGTGGCCGG TTGCTTACCT GGATCCAGGC ACCTACCGCT TCTATGCGGT GGTGACCACG
GGCACCGGCT CAATGACCAC CACTGAAAAT GTGGTCACCC TGACAGCCCC GGCGGGTACC
ACCGGTTGCA CCGCTCTGAC GGCCAGTGTG CTTAGCCCGG CCAACAGTGC TACCCTGGTG
GGCACGGCCA GTACGGTGAC GGCGGGTCGG GTGATCTGCC CGGTCAGTGT GACCACCTGC
GCTCCCAGCG GCACCACCAT CACTCAAGTG GAAATCTGGG CCAAGACTTC GGCGGGCACT
TTCCCCAACC GGATGGGCTA TGCTGTGGCT GATGCCAGTC GACCAGGGAC CTACACCCTG
TCAGCCAGTG AGGGAACGGC CAACGGCAAG TGGCCGGTTG CTTACCTGGA TCCAGGCACC
TACCGCTTCT ATGCGGTGGT GACCACGGGC ACCGGCTCAA TGACCACCAC TGAAAATGTG
GTCACCCTGA CAGCCCCGGC GGGTACCACC GGTTGCACCG CTCTGACGGC CAGTGTGCTT
AGCCCGGCCA ACAGCGCCAC TCTGGTGGGA ACAGCCAGTA CTACTCAACC GGGAACAGGC
AAGGTCACCA CAGCCTTGAG CGTGACCACC TGTGCCCCCA GCGGCACCAC CATCACTCAG
GTGGAAGTTT GGGCATCCCT GCCCGATGGC AGCTTTGCAA ATCGGATGGG TTATGCAGCA
GTTGATAGTA GTCGTCCAGG CGTATACATC TTATCAGCTA CTGAAGGGAC AACTACTGGC
AAATGGAGTT ATTACCCGCT CAACACAGGT ACCTATCGCT TTTATGCTAT TGTTACCACA
AACTCAAGCT CCATTACTAC TCTTGCTAAT GTTGTAACAT TAACCGCTCC ATAG
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| Protein sequence | MKALNVPSRD SFVPLQSRID QFIIYMGIFY LFLFNSGGTL WAQFQRPDVS LPSPNAASLG
LYGEVPVSLY TGTPNIDIPL YTIQEGKINV PITLSYHASG VRVNQHPGWV GLNWNLNAGG
AITRKMKGVL DEFNQSGIAG YYFNHDILNG PNWETKEYAK QIVQYATDTD PDEFNFNFMG
LSGSFYLNAK GNWAVRSDSK ISVTVDSNLM DVPPDLEKTC DADFFDVTFQ TPTGHNPKTF
GKFTLTTADG TRYIFGGTTN AIEYSMTFFG QSFSQSPQVK DIWTANTWYL KQIITPQGQE
IVFNYSADAC SSGKFVASFY NSYITGYFNS NSGNPGFLNL TSGCSGYSLG SPSGYVAGVL
TRPVYLDNIT SDKASISFTR SSTNELKYEA RILKSYFNQP GGGLSNVPTS IFPFLNYNGV
LGNSTTTPEG RIRALLDRLV WKQLDQIKVT NKDGLIVNKI NFEYSNDNTK RLTLNRVKYL
SNNDANCMNK YDFDYYTDYS LPNYLDSLDK TDHWGFFNGR EYNINTLPTT GFSYYETQKA
SSTNIQLLRS GSLKKITYPT GGYTEFDFEK HTSKKYQAIN RDASINLLTD STQVVGGIRI
KTITNKENSN AVLSTKQYNY LLSDGSSSGI SSGKPVYGTG AHKMSVCNET GSITMDIYSL
QSLLPTSVNS HGTHIGYSRV VEKNSDNSYK VYTYTNYESP DGSTHLDLPV ATALRIEGSD
ASRYEPFIDK SFERGLLLSE ESYDAQQRPV LRKVNTYRAL SNEFVEGMYR NSIAVCPGSG
RFGCSGFPYR IYTYQYKLDR EEVYTYTQGQ SQNAADRIEY IAYNSIGLPT EIKSTRNSKI
TVTKNKYSID YPLSGTIATV DEPSKAIRLM QSNNMTGMLI EQQIWSNDNG TLGMVDGFIN
LYRSYSATSG YVNIKPEKTL QYAVLTSNTS VITSSISSNG SGYIFNYDPD YKKVVVKFDD
PINAYTVRGE PIKFTDNNNL ITSITYYGGS KIGLIASKTI NSQTTVYDYK PLVGISSVKD
PNNINTLYEY DGFNRLLTVK DNWNNLLQSN SYNLVNSSGC STPKLAAEPL ITPFLSAIGQ
YSRVLIVGNS ITKLVAQSGS DGWQSPALTA AGGWGRASST QAKDFAHILE SRFKQLNPNA
QVLPLWEAPF ERDYINNNPA GWLTYDYSAL QTRIANGFSA SPSKPDLIII RLGENVVNSQ
VEPNNFKGAL NTLINKVMEV STPGAKVILT NSMWPDQPLA NVKIQEVANE RGFPFVDLSD
MISNPVFLAG NDPVTLAAFP NNTGDRHPGD AGMLEIADRI WSKVRNTNLA SNVGGNITKV
RLYPRTDCCI DRIVGSVIQG SNDITNPSSW TTLTTINETP IVGWNDYSVR TTTSWRYLRF
LAGPNCYGDL KELEFYNGSV KLVGSKFGST TAFNNDQTNY SFNVAFDGQV GATFWQGTGP
GLQNFAGLDL GSSCTALTAS VLSPANSATL VGTASTVTAG RVICPVSVTT CAPSGTTITQ
VEIWAKTSAG TFPNRMGYAV ADASRPGTYT LSASEGTANG KWPVAYLDPG TYRFYAVVTT
GTGSMTTTEN VVTLTAPAGT TGCTALTASV LSPANSATLV GTASTVTAGR VICPVSVTTC
APSGTTITQV EIWAKTSAGT FPNRMGYAVA DASRPGTYTL SASEGTANGK WPVAYLDPGT
YRFYAVVTTG TGSMTTTENV VTLTAPAGTT GCTALTASVL SPANSATLVG TASTTQPGTG
KVTTALSVTT CAPSGTTITQ VEVWASLPDG SFANRMGYAA VDSSRPGVYI LSATEGTTTG
KWSYYPLNTG TYRFYAIVTT NSSSITTLAN VVTLTAP
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