Gene Cpin_2075 details

Gene Information

• Locus tag: Cpin_2075
• ID: 8358227
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: +
• Start bp: 2531015
• End bp: 2534404
• Gene Length: 3390 bp
• Protein Length: 1129 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 644964260
• Product: YD repeat protein
• Protein accession: YP_003121769
• Protein GI: 256421116

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 49
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTATTACT GTAAAACGGT AAATTCAAGA TGGTGGAGAT CTATTCTCCT GTTAATTCCC 
TTTTTTTTCA CGGCCAGTTC AAGAGCGCAG GTTAACTCTA TTACCGGAGG CGTAGAGCTT 
AGCGTTCCTT TATACTCTTA TAGTGATGGG GATAAGCTTG CGCTGAATGT AAATGTAACC 
TATACAGCCG GTAATGGTGT GAAGGTGAAT GATATGGCTT CAGAGGTAGG TCTAGGATGG 
AAAATAAACG CTGGTGGCTC TATTAGCAGA ATGACTATGG GTAAACCAGA CGATCAGTAT 
GGTAACCTTG GAATTAACAA AACGGGTACT GGAAGAATGT ATGCTCCTTA CACATCTCTG 
CTGACTGATT GTTATAGCGA TGTTGGAACA TTGAAAAGAG AGTATAATGG ATGGGACAGG 
GAGGCTGATG TTTTCTTCTT CAGCTTTAAC GGTCGTTCGG GTAGCTTCGT AATAGGCAGA 
AAGAAATCTG GTGATACTGA ATACCCTGTA ACGGTTATAG GGGATTCAAA GTTAAAAGTA 
AGGTTATTTG AAGCAGATAT GTCTTCCTCA AATGTGATTA CCAGAATTAC AAGGTTTGAA 
ATAATTACTG AAGATGGAAC TCAATATACG TTTAGCAACA AAGAATTGAG TGAGATATTC 
ACAACAGATA GAGATGAAGC AGTAAGTCCC CCGCCGATTA GCGGACCAAT AAAAGTAATA 
CATCCGGGCG ACCCGATTCC AACATCCGAT GAAGTGACTG TTACTCCCTA TCATACAGGC 
AAGTATGTAG TTAACAACTG GTACTTGACG CAGGTAAAGA ATGTCCGAAC GCAAAAGGCT 
ATTAATTATG TTTATGATAG TTATTCTGTG GACTATTCTT TTTTGGGCCT GCCTATAAAA 
ACTGCTACTT TAAATGCTGC TAATGAGGTA GACAACATCA ATTATACCAT TTTCAATCAG 
CAGTTTGCAG GGGTAAAAAT GCGTTTGGCT ACTATATACG CAGGAGGTTA TGCTACTTTA 
ACATTTACTT ACGATAATAC GAGGCAGGAT CTTGTGGGTG AACCTGTACT TACGGCACTT 
AAGGTTACAG CACGTGATGA AAATGCAGTC ATTGCTAATT ACAATTTTAA CTATCGGTAT 
CATAATGTCG GTTCCTTTAT GAACTATGCA GATGCTCCTG CAGCAACTGC TACGGCGAAG 
GCCAATCTAC GACTGTCTTT AATGTCCATC GAAAACGTAA TATCAGGAAG TCCCAAGCCA 
TATATGTCTT TTGATTATAA GCCGGGAATT GTTCCGGGTC GGGGGTCAAT GTGGCAGGAT 
ATGTATGGAT ATTTTATAGG CGTCTTTGCC TATGGCCGTC GTCTGGACGA TTTCTTTAAT 
GATCAGTACC GGTTACCGGC TGCTACTAAT CCACTATCAA CCCAGGTCAG GATGGCTGCA 
CAAATGGGAA TGCTTGATAA GGTTAACTAT GCTGCGGGGG GATATTTGCA GTATGATTAT 
GAAAATAACA GCTATTTCAA TAATGGTACT GAACAATATT ATGGTGGAGT GAGGGTTGCA 
AGCGCAACAT TGTACGATGG TATTGATCAT GCTAATGATC AGGTTGTTAC CTATAAATAT 
AGAAATGCTG ATGGTTCCTC ATCTGGTACG GGATATGAGA CAGGTACATA TACAAAGGAT 
AATTCATCAT ATTATGTGTC GAATGGCACT CACATGGCTA GTAAAATTAT TTCCTATGCC 
GTTAATACTG CGGTATCAAT TTATAGCGGT AATCCCACGT TAAGCTCGGG TATTCAAGCC 
TCAGAACTTA CGAAACTAAT AGATGATATT ATTTCTTTTT TCATAGGTAA TAAGGCGGAA 
ACAGCTACTT ATAATACCCG CTCCTGGGCG GCATATCCTT TATTTACAAC AAACCCTCTA 
CCATTCTTTT ATAGCAGGGT TGAAGTCATA CACGGTACTG AGGCTGCTAA TAAAGGAAAA 
ATTGTATATC AATATACTGA TTTTGGAGAC AAGGAGCCAT ATACCACAAA ACTAAATCCT 
CCTTATTCTG CTGCACAACG TGTGCAAAGC TGGGCAATTG GAAATCCAAG AAATGTTACT 
ACATATAGTG CTTCCGGTAA AGTGATAAAG GATGTTTTTA ATGAATATAA GGTCATCTCG 
ACATCACTTT CAGATTCTAT AATGGTCTCC TGCAAATGTG ATGAATATAA TAGTGTGTCT 
CCGTGGACAT TGCAAAATAG TTTGAGAAGT AAGATTAATT TTTATTCAGA GACGTACTAT 
CCTGTTACCG GAAGAGCAGA ATTGGTGAGA GAAACAGAGC GTTTTTTTGA TCTGAACGGG 
AATATTACAA CCAATATTAC TGACTATGAA TATGATCTCA ACTATTATAA CTTAAAGAAG 
ATCACCACAA CAAACAGTAA AAACGAGGTC ATTGAGGAAA GGATCTACTA TCCTTACAAC 
TACAGTGCTA ATAGTGTTTT GACTTCAATG ACCAGTAACA ATGAGATTAA TACAACTGTT 
GCTACAGAAA CCTGGTTGGT AAACGGTACA GATAGAAAAA TAGTGAACGG CGTATTTTCT 
AATTTTGTCG TGCAGACTAA CGGTGCAGTT TTGCCCTCAT CTTCCTATCA ATTTTTTAGT 
AACAAACCGG TTGCGGAAGG TACCATTGGT GTATTTAATG GTGTGTTGAA CAGAGCGCCA 
GCTTATTTTA AAGAAGATGT CAAATATGCA TATGATATTT TTGGCAACGT ATCGCAGGTA 
GAAACAAAAG GTGAGATCAA TAGCTATATT CATGACTATT GGCGTCAAAT GTTAGCCCTG 
ACAACAAATG CTGCCTATTC GGAAACTGCA TATGCAGGAT TTGAGGAGGC CGAAAATGGA 
ACATGGGCAT ATTCATTTAG TGGTATCGCC GCGGATGAAA GTAATGGTAC TATACAAACG 
CCGAAGCCGA TGACGGGTAC TTTTTATTAT AAACTCGCCA ACGGGAATAT TACTAAAAGC 
GCAACAGGTC TTGTGGCGGG TAAAAAATAT AAGATTAGCT ATTGGGTTAC AACAGGGGCT 
ATCGCAACAA ATCCGCAACC AGTTACTCTG AACTATACCA ATACTTTTAT AAAACTTAAT 
AAGTATAATA ACTATACCTA CTTTGAACAT GAGTTTACCA TGGGGACATC TGATATTGTT 
CTATCAGGAT CAGTTACACT CGACAATCTG AGACTTTATC CATCTGATGC CGTTATGCAG 
ACTTATGACT ATGACAAAAA AGGGAATATA ATTTCTTCTA TAGATGAAAA CAATAAGATA 
TTGATATATC AATATGATAA TCAAAATCGT CCCATAAGCT TGTTTGACCA GTATAGCAAT 
ATGTTAAAGC ATTATGAGTA TAACTATTGA 

 

Protein sequence

MYYCKTVNSR WWRSILLLIP FFFTASSRAQ VNSITGGVEL SVPLYSYSDG DKLALNVNVT 
YTAGNGVKVN DMASEVGLGW KINAGGSISR MTMGKPDDQY GNLGINKTGT GRMYAPYTSL 
LTDCYSDVGT LKREYNGWDR EADVFFFSFN GRSGSFVIGR KKSGDTEYPV TVIGDSKLKV 
RLFEADMSSS NVITRITRFE IITEDGTQYT FSNKELSEIF TTDRDEAVSP PPISGPIKVI 
HPGDPIPTSD EVTVTPYHTG KYVVNNWYLT QVKNVRTQKA INYVYDSYSV DYSFLGLPIK 
TATLNAANEV DNINYTIFNQ QFAGVKMRLA TIYAGGYATL TFTYDNTRQD LVGEPVLTAL 
KVTARDENAV IANYNFNYRY HNVGSFMNYA DAPAATATAK ANLRLSLMSI ENVISGSPKP 
YMSFDYKPGI VPGRGSMWQD MYGYFIGVFA YGRRLDDFFN DQYRLPAATN PLSTQVRMAA 
QMGMLDKVNY AAGGYLQYDY ENNSYFNNGT EQYYGGVRVA SATLYDGIDH ANDQVVTYKY 
RNADGSSSGT GYETGTYTKD NSSYYVSNGT HMASKIISYA VNTAVSIYSG NPTLSSGIQA 
SELTKLIDDI ISFFIGNKAE TATYNTRSWA AYPLFTTNPL PFFYSRVEVI HGTEAANKGK 
IVYQYTDFGD KEPYTTKLNP PYSAAQRVQS WAIGNPRNVT TYSASGKVIK DVFNEYKVIS 
TSLSDSIMVS CKCDEYNSVS PWTLQNSLRS KINFYSETYY PVTGRAELVR ETERFFDLNG 
NITTNITDYE YDLNYYNLKK ITTTNSKNEV IEERIYYPYN YSANSVLTSM TSNNEINTTV 
ATETWLVNGT DRKIVNGVFS NFVVQTNGAV LPSSSYQFFS NKPVAEGTIG VFNGVLNRAP 
AYFKEDVKYA YDIFGNVSQV ETKGEINSYI HDYWRQMLAL TTNAAYSETA YAGFEEAENG 
TWAYSFSGIA ADESNGTIQT PKPMTGTFYY KLANGNITKS ATGLVAGKKY KISYWVTTGA 
IATNPQPVTL NYTNTFIKLN KYNNYTYFEH EFTMGTSDIV LSGSVTLDNL RLYPSDAVMQ 
TYDYDKKGNI ISSIDENNKI LIYQYDNQNR PISLFDQYSN MLKHYEYNY