36 homologs were found in PanDaTox collection
for query gene Swoo_0642 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_0642  curli production assembly/transport component CsgF, putative  100 
 
 
130 aa  260  5e-69  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00175392  unclonable  1.39477e-08 
 
 
-
 
NC_008577  Shewana3_3254  curli production assembly/transport component CsgF, putative  71.54 
 
 
131 aa  195  2e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3153  curli production assembly/transport component CsgF, putative  71.54 
 
 
131 aa  195  2e-49  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0869  curli production assembly/transport component CsgF, putative  70.77 
 
 
131 aa  194  4e-49  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3686  curli production assembly/transport component CsgF, putative  70.77 
 
 
131 aa  192  1e-48  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2985  curli production assembly/transport component CsgF, putative  72.09 
 
 
131 aa  191  2e-48  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2858  curli production assembly/transport component CsgF, putative  73.6 
 
 
129 aa  192  2e-48  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1004  curli production assembly/transport component CsgF, putative  71.32 
 
 
131 aa  190  7e-48  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3335  curli production assembly/transport component CsgF, putative  71.32 
 
 
131 aa  190  7e-48  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1037  curli production assembly/transport component CsgF, putative  71.32 
 
 
131 aa  190  7e-48  Shewanella baltica OS195  Bacteria  normal  normal  0.730845 
 
 
-
 
NC_011663  Sbal223_1025  curli production assembly/transport component CsgF, putative  71.32 
 
 
131 aa  190  7e-48  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0970  curli production assembly/transport component CsgF, putative  70.31 
 
 
135 aa  179  1e-44  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01505  putative curli production assembly/transport component  41.61 
 
 
151 aa  110  5e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2473  curli production assembly/transport component CsgF precursor  41.73 
 
 
137 aa  97.8  4e-20  Pseudomonas putida W619  Bacteria  normal  0.947001  normal  0.308509 
 
 
-
 
NC_009092  Shew_1728  curli production assembly/transport component CsgF precursor  46.67 
 
 
139 aa  96.3  1e-19  Shewanella loihica PV-4  Bacteria  normal  0.6125  normal 
 
 
-
 
NC_009901  Spea_1819  curli production assembly/transport component CsgF precursor  41.8 
 
 
135 aa  94  6e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0321037  n/a   
 
 
-
 
NC_008345  Sfri_1519  curli production assembly/transport component CsgF precursor  41.13 
 
 
133 aa  92.4  2e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.817654  n/a   
 
 
-
 
NC_010322  PputGB1_2464  curli production assembly/transport component CsgF precursor  39.26 
 
 
137 aa  92  2e-18  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3473  curli fiber protein CsgF, putative  40.87 
 
 
137 aa  86.7  1e-16  Pseudomonas putida KT2440  Bacteria  normal  0.910163  normal  0.86735 
 
 
-
 
NC_009512  Pput_2298  hypothetical protein  40.87 
 
 
137 aa  86.7  1e-16  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1992  curli fiber protein CsgF, putative  37.61 
 
 
143 aa  86.3  1e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0290148  normal  0.0475001 
 
 
-
 
NC_011312  VSAL_I2856  assembly/transport component in curli production, CsgF precursor  34.88 
 
 
133 aa  72  2e-12  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.618254  n/a   
 
 
-
 
NC_007511  Bcep18194_B2587  hypothetical protein  35.96 
 
 
145 aa  69.7  1e-11  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2350  hypothetical protein  29.55 
 
 
134 aa  67.4  6e-11  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6062  Curli production assembly/transport component CsgF  29.79 
 
 
140 aa  62  3e-09  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4729  Curli production assembly/transport component CsgF  29.2 
 
 
134 aa  58.5  3e-08  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2731  hypothetical protein  32.03 
 
 
136 aa  57  8e-08  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.297491  normal 
 
 
-
 
NC_011004  Rpal_1275  hypothetical protein  31.88 
 
 
138 aa  55.8  2e-07  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2414  hypothetical protein  31.58 
 
 
152 aa  54.7  4e-07  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.111382 
 
 
-
 
NC_010725  Mpop_0031  hypothetical protein  29.73 
 
 
148 aa  50.1  1e-05  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0754943 
 
 
-
 
NC_011083  SeHA_C1251  curli assembly protein CsgF  30.43 
 
 
138 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.583171 
 
 
-
 
NC_011205  SeD_A2233  curli assembly protein CsgF  30.43 
 
 
138 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.697441 
 
 
-
 
NC_011149  SeAg_B2050  curli assembly protein CsgF  30.43 
 
 
138 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.360052  n/a   
 
 
-
 
NC_011094  SeSA_A1206  curli assembly protein CsgF  30.43 
 
 
138 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.388292  normal  0.563866 
 
 
-
 
NC_011080  SNSL254_A1236  curli assembly protein CsgF  30.43 
 
 
138 aa  43.1  0.001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.788328  normal 
 
 
-
 
NC_011004  Rpal_3753  hypothetical protein  53.33 
 
 
94 aa  41.2  0.005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
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