12 homologs were found in PanDaTox collection
for query gene Rpic_1885 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010682  Rpic_1885  putative transmembrane protein  100 
 
 		 155 aa  304  3e-82  Ralstonia pickettii 12J  Bacteria  decreased coverage  0.00765988  normal  0.505321 
 
 
-
 
NC_012856  Rpic12D_1556  hypothetical protein  97.42 
 
 		 155 aa  296  9e-80  Ralstonia pickettii 12D  Bacteria  normal  0.969834  normal  0.226901 
 
 
-
 
NC_003296  RS01728  hypothetical protein  74.68 
 
 		 159 aa  236  1e-61  Ralstonia solanacearum GMI1000  Bacteria  normal  0.906647  normal  1 
 
 
-
 
NC_010581  Bind_3434  putative transmembrane protein  35.81 
 
 		 164 aa  90.9  6e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.517688  normal  0.287018 
 
 
-
 
NC_003295  RSc0612  hypothetical protein  37.42 
 
 		 192 aa  79.7  0.00000000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_0707  transmembrane protein  37.14 
 
 		 157 aa  73.2  0.000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.192149  normal  0.111144 
 
 
-
 
NC_010682  Rpic_1845  putative transmembrane protein  32.39 
 
 		 163 aa  65.1  0.0000000003  Ralstonia pickettii 12J  Bacteria  normal  0.298239  hitchhiker  0.000000196844 
 
 
-
 
NC_012849  Rpic12D_5382  hypothetical protein  32.39 
 
 		 163 aa  65.1  0.0000000003  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.177051 
 
 
-
 
NC_009485  BBta_2628  hypothetical protein  31.39 
 
 		 176 aa  58.5  0.00000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0242868  normal  1 
 
 
-
 
NC_007520  Tcr_0415  hypothetical protein  31.82 
 
 		 153 aa  52.4  0.000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0427258  n/a   
 
 
-
 
NC_008700  Sama_2658  hypothetical protein  34.83 
 
 		 170 aa  47  0.00009  Shewanella amazonensis SB2B  Bacteria  normal  0.0122085  normal  1 
 
 
-
 
NC_009379  Pnuc_1566  hypothetical protein  28.24 
 
 		 139 aa  43.9  0.0008  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
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