16 homologs were found in PanDaTox collection
for query gene VEA_003338 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009783  VIBHAR_01701  hypothetical protein  79.91 
 
 		 433 aa  714    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
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NC_013456  VEA_003338  type III secretion inner membrane protein YscD  100 
 
 		 433 aa  877    Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
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NC_008463  PA14_42340  type III export protein PscD  33.33 
 
 		 432 aa  221  3e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
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NC_010157  YpAngola_B0055  type III secretion apparatus protein YscD  27.86 
 
 		 419 aa  155  1e-36  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
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NC_011353  ECH74115_5053  type III secretion apparatus protein, YscD/HrpQ family  24.02 
 
 		 406 aa  93.6  6e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
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NC_009997  Sbal195_2250  YscD/HrpQ family type III secretion apparatus protein  22.54 
 
 		 401 aa  78.6  0.0000000000002  Shewanella baltica OS195  Bacteria  normal  0.123284  normal  0.0388601 
 
 
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NC_009052  Sbal_1947  YscD/HrpQ family type III secretion apparatus protein  22.3 
 
 		 401 aa  77.4  0.0000000000004  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
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NC_009708  YpsIP31758_3829  YscD/HrpQ family type III secretion apparatus protein  22.17 
 
 		 404 aa  77.4  0.0000000000005  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
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NC_010465  YPK_3916  YscD/HrpQ family type III secretion apparatus protein  22.17 
 
 		 404 aa  77.4  0.0000000000005  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
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NC_010159  YpAngola_A3942  YscD/HrpQ family type III secretion apparatus protein  22.41 
 
 		 403 aa  76.6  0.0000000000008  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
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NC_011094  SeSA_A1492  type III secretion apparatus protein, YscD/HrpQ family  22.98 
 
 		 399 aa  57.8  0.0000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.519632 
 
 
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NC_011149  SeAg_B1777  type III secretion apparatus protein, YscD/HrpQ family  22.98 
 
 		 399 aa  57.4  0.0000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0349319  n/a   
 
 
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NC_011083  SeHA_C1529  type III secretion apparatus protein, YscD/HrpQ family  22.74 
 
 		 399 aa  54.7  0.000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.055163 
 
 
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NC_011080  SNSL254_A1507  type III secretion apparatus protein YscD/HrpQ family  22.49 
 
 		 399 aa  53.5  0.000007  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.574995  hitchhiker  0.00233459 
 
 
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NC_011205  SeD_A1947  type III secretion apparatus protein, YscD/HrpQ family  22.49 
 
 		 399 aa  53.5  0.000007  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.389941 
 
 
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NC_008741  Dvul_2996  YscD/HrpQ family type III secretion apparatus protein  42.22 
 
 		 598 aa  44.7  0.003  Desulfovibrio vulgaris DP4  Bacteria  normal  1  n/a   
 
 
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