| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003338 |
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| Symbol | |
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| ID | 8557071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1900821 |
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| End bp | 1902122 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406433 |
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| Product | type III secretion inner membrane protein YscD |
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| Protein accession | YP_003285963 |
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| Protein GI | 262394109 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCAAT GGAAAATTCG TATTTTATCA GGCGTGCATT CCGGAGTTGA AGTCACCTTA
CCTGAGGGCG CTCTTGTGCT TGGCAGTGAC GACTTTATCG CAGATCTCGT GCTGTCTGAT
GCTGGGGTCG AAGCTAACCA TTTCACGTTG GTTTGCCAGC AAGACTCGGT CATTTTACGA
GGCTGCAAAG AGGCAAATAT TAACGGTGAA AACATCTCTG TTGAAGATGA TGGGATCGAG
TTGTCACGCC ATGCCGTTGT CTCTGTAGGC GTTGTGAAGT TCGCACTGGG GTACGCAGAA
GATGCGTTAA TCGTGAGTAA CGTCAGCGAC GAATCTAGCG AACAGGATAC ACCTGTTGTT
GCTGTACAAC GCTCTAGCTG GAAAAAAACA ACGCTCATCG CCTTGCTTTG TAGTTTTGTC
CCGAGTGTCA TTTTTGCTGG TATGTGGTAC AGCCAAGCTA ACGGAAACAA TAATGAGACT
GTCACAGAAG CAGAACCCAT TGTTTTGGTG CGCAACATCT TAGGCGAGCT CAAACTTAGC
GACGTTCGTG TGGAATGGAA TGCCGCCGCA CGCCAAGCGG TTTTGGAAGG CTATGTTGAA
GATCGAACTC AGAAACTCGA TCTGCTTGGT CGAATTGATG TACTAGGTAT CAATTACAAA
AGTGACTTAA GAACGATGGA AGAAATCCGT CGCGGGGTTC GATTTATTTT GCGAAACCTC
GGCTATCACC AGGTGAAAGT CGAAAATGGG GATGAGACGG GCACACTGTT ACTGACGGGT
TATATCGATG ATGCAAGCCG CTGGAACCAA GTTGAGCAAA TTTTAGAGCG AGACGTACCG
GGCCTAGTAG CGTGGAAGGT TGAACTGCAA AGAGCGGGTG CCTACATGGA TACGCTAAAA
GCCTTATTGA CGGATGCAGA GCTACTGAAA AAAGTCCAGT TGGTTACTAG CGGTGATCGC
ATCGAAGTAC GCGGGGAACT TGATGATATC GAAACGACTC GATTTTACGG TGTGACTCGA
GACTTCCGAG AACAATATGG TGAAAAACCA TATTTAGTTT TGAAATCCAT ACCTAAGGTG
AGTAAAGGCA CCAACATCGA TTTCCCTTTT CGTAGCGTTA ACTTTGGTCA GGTTCCATAT
GTGATTCTGA CTGATAACGT TCGTTACATG GTTGGTGCAA GAACGCCTCA AGGCTACCGC
ATATCCAGTG TTACGCCTGC TGGCATTGAG CTGGTCAAAG GCGGGCGGGT GATAACAATA
GAACTCGGAT ACGAGGGCGA GACGAACAAT GACAAATCTT GA
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| Protein sequence | MQQWKIRILS GVHSGVEVTL PEGALVLGSD DFIADLVLSD AGVEANHFTL VCQQDSVILR
GCKEANINGE NISVEDDGIE LSRHAVVSVG VVKFALGYAE DALIVSNVSD ESSEQDTPVV
AVQRSSWKKT TLIALLCSFV PSVIFAGMWY SQANGNNNET VTEAEPIVLV RNILGELKLS
DVRVEWNAAA RQAVLEGYVE DRTQKLDLLG RIDVLGINYK SDLRTMEEIR RGVRFILRNL
GYHQVKVENG DETGTLLLTG YIDDASRWNQ VEQILERDVP GLVAWKVELQ RAGAYMDTLK
ALLTDAELLK KVQLVTSGDR IEVRGELDDI ETTRFYGVTR DFREQYGEKP YLVLKSIPKV
SKGTNIDFPF RSVNFGQVPY VILTDNVRYM VGARTPQGYR ISSVTPAGIE LVKGGRVITI
ELGYEGETNN DKS
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