| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_2996 |
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| Symbol | |
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| ID | 4661965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008741 |
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| Strand | - |
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| Start bp | 55380 |
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| End bp | 57176 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639813916 |
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| Product | YscD/HrpQ family type III secretion apparatus protein |
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| Protein accession | YP_961195 |
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| Protein GI | 120586850 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTA GCGGCGACAT CATCCTTCGC GTCTTCTCCG GCCCCCATAC GGGGGCCGAG
GTGGTGCTTC CGCCCGGCGA CCATGTCATC GGCACCGAAG ACTCGTGCGA CATCATCCTC
TCCGATGGCG GGCTTGCGCC ACGCCACGTC TCCATCGGCG TCACCGCCGG AGTGCCCGGT
GCGCCATCCA CCGTCCGCAT CACCCCGCTT GACGGCCCGG TGCGCTACGA CGATGCCGAG
GTGCCCGCCA CGGGCGTGAC CCTCGCCCCG GCGACCCCCT GCCACATCGG GGAGACCTGC
CTTGCATGGA ACACCCCCGG CGCACCGTGG GAGACCTTCG ACCTGACGCC GCGCCAGTCC
GTGACGGCTG CCGAAGGGAC GCCGCAGGCC ACGACCTCGG GCGGCACGGC ACAGGGCACC
CCTGCGGCGT CCGCCAGCGC ATCCCCGTCG GGTGCGGCGG ACGGTACCTC GCCGGGTCTG
TCTCTGACGC CAACACTTTC GGCAACGGCC GCCAACGAAG TTGACGACCT CGTACTCGGC
AGCCCCACCC GGCCCCACCA CGAAAAACGC TGGCGGTCGG CCCTGCTGGC TGCCGCCGTC
ATGCTGCTGT GCACCAGCAC GGTGGTCATC ACCCTTGAGA CCCGCCCACC CGCACCCCCT
GAACGCGCGG CGCACCTTGC GGCGCAGCTT CATGCCGCGG GACTGACCGC CTTGCGCGTC
GAGGCGCGCC CCGAAGGGGT GGTCGTCTCC GGGCTGCTGG ACGACGAGGC GCAGCGCATC
CGCCTGTGGG ACATGGCACG GAACCTGCTG TACCGGGTAC AGCTTGAGGT GGCTGTGCGC
AGCGACGTGC TGCACGCCGT GAAAGCCGCC TTCAACAGCC GTGGAATCTA CCCCGAGGTG
ACGTTCATGC CCGCCGCCGA CACCACGCCC ACCACACCGC CCCTGTCCGC GCAGGCCATG
CCCAAGGCTG TGCCGGGTAC GCCCGACGCC GGGACGGGTC TCGCGCAAAG CCCAGACACG
GCGACCACCA GCATGGCGGG CACCGGCACG GCAGCGAGTG GCGTTGCGGG TACAGGCGGC
AACAATGGCG ACAACAGCGA CGGAAAGAGC ATCGGCGGCA TGACGGCAGG CACCGTGCCC
GCCGGGGCTG CGACGCTGGC ATCCGCCCCG CTTGCGACCC CGCAAGCCAA GGCGGGTCTG
CGTGTCGCGG GCTACATGCG CGACGGCGTG GTGGAGGCAT GGGCCTTCGA CGCGCTGCGC
GAAGACGTGC CGCAGATGCC GCACGTCACC CGCGACCTGC GCTATGCCAG TCAGGTGGCC
CCCGTCCTCG ACCCGCTGCT TGCCGACGCG GGGCTGAAGC ATGTGCAGAC GCGCTACCTT
TCAGGCGTGG TGCAACTCTC CGGCGACCTC GACGCGGCAC AGCGCGAGGC CCTCGACACC
GTGCTGGCGC AGACGCGCAC GCGGCTTCAG GTCGACATCC CCTTCGAGGT CGTCCAATCG
GCCCCGGCAC CCGACAAGAA ACAGCAGGAG GCCCCCGCCC CGGTGGCGGG CCGCGGCTTC
ACCCCCGCAC GGCACGAGGC CGCAGCCCCG GCACAGGCCG AGGGGCCACA GGGCATCGAC
GTGCGCAGTG TCACCCTCAC GCCGTTACGC TTCGTCACCA CGGGCGACGG ACAACGCATC
TTCGAAGGCG GCATGCTGCC GGGCGGCTAT GTCGTCGAAT CCATAAGCAC CACCGAACTC
CATCTGCGCA AGGATGGACG TTCCACCATC TACCGACTGA GAGGTTCCCA TGACTGA
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| Protein sequence | MSSSGDIILR VFSGPHTGAE VVLPPGDHVI GTEDSCDIIL SDGGLAPRHV SIGVTAGVPG
APSTVRITPL DGPVRYDDAE VPATGVTLAP ATPCHIGETC LAWNTPGAPW ETFDLTPRQS
VTAAEGTPQA TTSGGTAQGT PAASASASPS GAADGTSPGL SLTPTLSATA ANEVDDLVLG
SPTRPHHEKR WRSALLAAAV MLLCTSTVVI TLETRPPAPP ERAAHLAAQL HAAGLTALRV
EARPEGVVVS GLLDDEAQRI RLWDMARNLL YRVQLEVAVR SDVLHAVKAA FNSRGIYPEV
TFMPAADTTP TTPPLSAQAM PKAVPGTPDA GTGLAQSPDT ATTSMAGTGT AASGVAGTGG
NNGDNSDGKS IGGMTAGTVP AGAATLASAP LATPQAKAGL RVAGYMRDGV VEAWAFDALR
EDVPQMPHVT RDLRYASQVA PVLDPLLADA GLKHVQTRYL SGVVQLSGDL DAAQREALDT
VLAQTRTRLQ VDIPFEVVQS APAPDKKQQE APAPVAGRGF TPARHEAAAP AQAEGPQGID
VRSVTLTPLR FVTTGDGQRI FEGGMLPGGY VVESISTTEL HLRKDGRSTI YRLRGSHD
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