| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_B0055 |
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| Symbol | yscD |
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| ID | 5798285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010157 |
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| Strand | + |
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| Start bp | 37208 |
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| End bp | 38467 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641337866 |
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| Product | type III secretion apparatus protein YscD |
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| Protein accession | YP_001604486 |
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| Protein GI | 162417809 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 60 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 93 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTTGGG TCTGTCGTTT TTATCAAGGG AAGCACCGTG GTGTTGAAGT TGAGCTTCCT
CATGGGCGCT GTGTTTTTGG TTCAGACCCG TTGCAGTCAG ATATTGTTCT TTCTGACAGC
GAAATAGCAC CCGTGCATTT AGTGCTGATG GTCGATGAAG AAGGTATTCG CCTAACTGAT
TCTGCAGAAC CTCTACTACA AGAAGGGCTT CCCGTGCCGT TGGGGACTCT TCTTCGCGCG
GGCTCTTGTC TGGAAGTAGG TTTTTTACTG TGGACATTTG TCGCCGTAGG GCAACCTTTG
CCAGAGACGT TACAGGTTCC CACGCAGAGA AAAGAGCCAA CCGACAGGTT ACCTCGTTCA
CGACTTGGGA TTGGGCTTGG AGTTCTTTCT TTATTGTTGC TTTTGACTTT TTTGGGGCTG
CTAGGGCACG GATTGTGGCG CGAGTATAAC CAGGATGGAC AACTTGTTGA GCAAGAAGTA
CGGCGCTTGC TGGCAACTGC TGCTTACAAG GATGTCGTTT TAACATCGCC CAAAAAAGAG
GGTGAACCTT GGTTATTAAC TGGTTATATC CAGGATAATC ATGCCCGCTT GTCACTGCAA
AATTTTCTTG AGAGCCATGG CATTCCATTC CGGCTTGAAC TGCGCAGCAT GGAAGAACTG
CGTCAGGGGG CAGAATTCAT CCTGCAACGG TTGGGATACC ATGGAATTGA GGTTTCTTTA
GCACCGCAAG CGGGATGGCT ACAATTGAAT GGGGAAGTGT CAGAGGAAAT ACAAAAGCAA
AAAATTGATA GCCTGCTGCA AGCTGAAGTG CCAGGGCTGC TCGGTGTAGA AAGTAAAGTG
CGGATTGCCG GTAATCAACG CAAGCGGCTT GATGCATTAC TTGAACAATT TGGTCTGGAT
TCAGATTTCA CTGTAAATGT TAAAGGTGAG CTGATTGAAT TACGCGGGCA AGTCAATGAT
GAAAAATTGA ATTCATTTAA TCAACTACAA CAAACTTTTC GCCAAGAGTT TGGCAATCGA
CCTAAATTAG AACTGGTCAA TGTCGGGGGG CAACCCCAGC ATGATGAATT GAATTTCGAG
GTGCAAGCTA TCTCGTTAGG GAAAGTGCCT TATGTGGTAC TCGACAATCA TCAACGCTAT
CCAGAAGGTG CCATACTTAA CAATGGCGTT CGTATTCTGG CTATTCGACG CGATGCGGTG
ATTGTGAGTA AAGGAAAACG GGAATTTGTG ATCCAACTCA ATGGAGGTAA ACCTCGATGA
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| Protein sequence | MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM VDEEGIRLTD
SAEPLLQEGL PVPLGTLLRA GSCLEVGFLL WTFVAVGQPL PETLQVPTQR KEPTDRLPRS
RLGIGLGVLS LLLLLTFLGL LGHGLWREYN QDGQLVEQEV RRLLATAAYK DVVLTSPKKE
GEPWLLTGYI QDNHARLSLQ NFLESHGIPF RLELRSMEEL RQGAEFILQR LGYHGIEVSL
APQAGWLQLN GEVSEEIQKQ KIDSLLQAEV PGLLGVESKV RIAGNQRKRL DALLEQFGLD
SDFTVNVKGE LIELRGQVND EKLNSFNQLQ QTFRQEFGNR PKLELVNVGG QPQHDELNFE
VQAISLGKVP YVVLDNHQRY PEGAILNNGV RILAIRRDAV IVSKGKREFV IQLNGGKPR
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