12 homologs were found in PanDaTox collection
for query gene Rpic12D_4746 on replicon NC_012855
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012855  Rpic12D_4746  type IV secretory pathway VirB3 family protein  100 
 
 		 106 aa  218  3e-56  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.276825 
 
 
-
 
NC_007901  Rfer_4261  hypothetical protein  34.31 
 
 		 101 aa  69.7  0.00000000001  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_013930  TK90_2820  hypothetical protein  34.31 
 
 		 112 aa  66.6  0.0000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  0.626109 
 
 
-
 
NC_010683  Rpic_5014  type IV secretory pathway VirB3 family protein  35.23 
 
 		 118 aa  57.4  0.00000006  Ralstonia pickettii 12J  Bacteria  normal  0.0416986  normal  1 
 
 
-
 
NC_012851  Rpic12D_5419  type IV secretory pathway VirB3 family protein  35.23 
 
 		 118 aa  57.4  0.00000006  Ralstonia pickettii 12D  Bacteria  normal  1  n/a   
 
 
-
 
NC_007949  Bpro_5228  hypothetical protein  33 
 
 		 101 aa  55.8  0.0000002  Polaromonas sp. JS666  Bacteria  normal  0.829302  normal  1 
 
 
-
 
NC_007950  Bpro_5466  type IV secretory pathway, VirB3-like  28.71 
 
 		 99 aa  54.7  0.0000004  Polaromonas sp. JS666  Bacteria  normal  1  decreased coverage  0.00819718 
 
 
-
 
NC_010553  BamMC406_6507  hypothetical protein  28.72 
 
 		 103 aa  48.1  0.00004  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007972  Rmet_6304  hypothetical protein  34.74 
 
 		 109 aa  45.8  0.0002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_1523  hypothetical protein  28.7 
 
 		 109 aa  45.8  0.0002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010087  Bmul_5608  hypothetical protein  24.71 
 
 		 87 aa  45.1  0.0003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.396874  normal  1 
 
 
-
 
NC_011061  Paes_2348  type IV secretory pathway VirB3 family protein  32.93 
 
 		 83 aa  43.9  0.0007  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  n/a   
 
 
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