17 homologs were found in PanDaTox collection
for query gene Ssed_2234 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_2234  spermidine/putrescine-binding periplasmic protein-like protein  100 
 
 		 377 aa  780    Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
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NC_010506  Swoo_2390  spermidine/putrescine-binding periplasmic protein-like protein  60.5 
 
 		 373 aa  461  1e-129  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.951238 
 
 
-
 
NC_010506  Swoo_3366  spermidine/putrescine-binding periplasmic protein-like protein  44.18 
 
 		 361 aa  303  4.0000000000000003e-81  Shewanella woodyi ATCC 51908  Bacteria  normal  0.424876  normal  0.320471 
 
 
-
 
NC_008043  TM1040_3572  spermidine/putrescine-binding periplasmic protein-like  41 
 
 		 357 aa  278  1e-73  Ruegeria sp. TM1040  Bacteria  normal  0.0154888  normal  0.0251545 
 
 
-
 
NC_007954  Sden_1074  spermidine/putrescine-binding periplasmic protein-like protein  28.29 
 
 		 358 aa  113  7.000000000000001e-24  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
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NC_007498  Pcar_0468  ABC transport protein  24.27 
 
 		 372 aa  88.2  2e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_1208  extracellular solute-binding protein  23.1 
 
 		 366 aa  79.3  0.0000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  0.139759  n/a   
 
 
-
 
NC_007498  Pcar_0492  transport protein  21.62 
 
 		 369 aa  72  0.00000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_3242  extracellular solute-binding protein  23.15 
 
 		 340 aa  52.4  0.00001  Rhodoferax ferrireducens T118  Bacteria  normal  0.532256  n/a   
 
 
-
 
NC_007519  Dde_3673  polyamine ABC transporter, periplasmic polyamine-binding protein  23.6 
 
 		 348 aa  51.6  0.00002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_011312  VSAL_I1583  spermidine/putrescine-binding periplasmic protein precursor (SPBP)  21.82 
 
 		 362 aa  45.4  0.001  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0473653  n/a   
 
 
-
 
NC_009654  Mmwyl1_4308  extracellular solute-binding protein  22.33 
 
 		 369 aa  46.2  0.001  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00256094  normal  1 
 
 
-
 
NC_009457  VC0395_A1035  spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein  22.47 
 
 		 345 aa  45.8  0.001  Vibrio cholerae O395  Bacteria  hitchhiker  0.000000879227  n/a   
 
 
-
 
NC_008740  Maqu_0344  extracellular solute-binding protein  26.56 
 
 		 346 aa  46.2  0.001  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_3886  extracellular solute-binding protein  23.21 
 
 		 358 aa  44.3  0.004  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.768061 
 
 
-
 
NC_010676  Bphyt_5257  ABC spermidine/putrescine transporter, periplasmic ligand binding protein  28.57 
 
 		 431 aa  43.5  0.006  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.726657 
 
 
-
 
NC_010625  Bphy_5902  ABC spermidine/putrescine transporter, periplasmic ligand binding protein  31.65 
 
 		 433 aa  43.1  0.008  Burkholderia phymatum STM815  Bacteria  normal  0.950335  normal  1 
 
 
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