| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1035 |
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| Symbol | potD-1 |
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| ID | 5137653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1080309 |
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| End bp | 1081346 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532493 |
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| Product | spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein |
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| Protein accession | YP_001216981 |
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| Protein GI | 147673534 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000000879227 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA AACTGTTTGC GAGTGCTCTG TGCGCAGCAG CATTGTTCAC CACCAATGCA
ATGGCTAAAG ACCAAGAACT TTATTTCTAC AACTGGTCTG AATATATCCC GAGCGAAGTC
CTAGAAGACT TTACCAAAGA AACCGGAATC AAGGTTATCT ACTCTACCTA CGAATCCAAT
GAAAGCATGT ATGCCAAGCT CAAAACGCAA GGCGCTGGTT ATGATCTTGT GGTTCCTTCC
ACTTATTTTG TCTCTAAGAT GCGCAAAGAA GGCATGCTGC AAGAGATTGA CCATTCAAAA
CTTTCACATT TCAAAGACTT GGATCCAAAC TATCTCAATA AGCCTTTTGA TCCAGGCAAT
AAATTCTCTA TCCCTTATAT CTGGGGAGCG ACGGGTATCG GCATTAACAC CGATATGCTG
GATAAAAAAT CACTCAAAAA CTGGGGCGAT CTGTGGGATG CCAAATGGGC AGGTCAATTA
ATGCTGATGG ATGACGCTCG TGAAGTCTTC CATATCGCCC TGAGTAAGCT GGGATACTCG
CCTAACACGA CCAATCCCAA AGAGATTAAA GCCGCTTACC GTGAGCTGAA AAAGCTGATG
CCAAATGTCT TAGTGTTTAA CTCTGACTTC CCAGCCAACC CTTACCTCGC TGGTGAAGTG
TCACTAGGTA TGTTATGGAA TGGCTCAGCG TATATGGCCC GCCAAGAAGG CGCACCAATC
CAGATTATCT GGCCTGAAAA AGGCACCATT TTTTGGATGG ACAGCATCTC GATTCCTGCC
GGAGCCAAAA ATATCGAGGC CGCCCACAAG ATGATTGACT TCTTACTGCG TCCAGAAAAT
GCTGCAAAAA TCGCCTTAGA AATCGGCTAT CCAACACCCG TCAAAACCGC GCATGACCTA
CTGCCCAAAG AGTTTGCGAA TGACCCAAGT ATCTACCCAC CACAATCAGT GATTGACAAT
GGCGAGTGGC AAGATGAAGT GGGAGAGGCT AGCGTGCTTT ACGATGAGTA TTTCCAAAAG
CTAAAAGTAA ACGATTAA
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| Protein sequence | MKNKLFASAL CAAALFTTNA MAKDQELYFY NWSEYIPSEV LEDFTKETGI KVIYSTYESN
ESMYAKLKTQ GAGYDLVVPS TYFVSKMRKE GMLQEIDHSK LSHFKDLDPN YLNKPFDPGN
KFSIPYIWGA TGIGINTDML DKKSLKNWGD LWDAKWAGQL MLMDDAREVF HIALSKLGYS
PNTTNPKEIK AAYRELKKLM PNVLVFNSDF PANPYLAGEV SLGMLWNGSA YMARQEGAPI
QIIWPEKGTI FWMDSISIPA GAKNIEAAHK MIDFLLRPEN AAKIALEIGY PTPVKTAHDL
LPKEFANDPS IYPPQSVIDN GEWQDEVGEA SVLYDEYFQK LKVND
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