24 homologs were found in PanDaTox collection
for query gene Ssed_0879 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_0879  hypothetical protein  100 
 
 		 248 aa  514  1.0000000000000001e-145  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00268947  normal  1 
 
 
-
 
NC_010506  Swoo_0881  putative transcriptional regulator, CadC  47.77 
 
 		 246 aa  221  6e-57  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_0757  putative transcriptional regulator, CadC  48.18 
 
 		 151 aa  125  8.000000000000001e-28  Shewanella loihica PV-4  Bacteria  normal  0.19634  normal  1 
 
 
-
 
NC_008321  Shewmr4_0779  response regulator receiver protein  28.29 
 
 		 249 aa  116  3e-25  Shewanella sp. MR-4  Bacteria  normal  0.365042  normal  1 
 
 
-
 
NC_008322  Shewmr7_3244  response regulator receiver protein  27.89 
 
 		 249 aa  116  3e-25  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3347  transcriptional regulator  27.09 
 
 		 249 aa  111  9e-24  Shewanella sp. ANA-3  Bacteria  normal  0.730311  normal  1 
 
 
-
 
NC_009438  Sputcn32_0880  transcriptional regulator, CadC  28.17 
 
 		 247 aa  103  4e-21  Shewanella putrefaciens CN-32  Bacteria  normal  0.102623  n/a   
 
 
-
 
NC_008345  Sfri_0653  hypothetical protein  26.98 
 
 		 248 aa  101  1e-20  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00719508  n/a   
 
 
-
 
NC_008322  Shewmr7_3240  lysine decarboxylase transcriptional regulator, CadC  29.07 
 
 		 247 aa  99  6e-20  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_0783  lysine decarboxylase transcriptional regulator, CadC  29.46 
 
 		 247 aa  99  7e-20  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3343  lysine decarboxylase transcriptional regulator, CadC  29.46 
 
 		 247 aa  99  7e-20  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0940  transcriptional regulator-related protein  27.99 
 
 		 247 aa  97.8  1e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3438  winged helix family two component response transcriptional regulator  27.2 
 
 		 250 aa  97.4  2e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3632  response regulator receiver protein  28.57 
 
 		 265 aa  94.4  1e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_0883  response regulator receiver protein  26.92 
 
 		 244 aa  92.8  5e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_2749  putative transcriptional regulator, CadC  26.05 
 
 		 251 aa  85.9  6e-16  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0936  transcriptional regulator  25.1 
 
 		 248 aa  84.7  0.000000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3653  transcriptional regulator, CadC  27.41 
 
 		 249 aa  83.2  0.000000000000004  Shewanella baltica OS195  Bacteria  normal  0.409424  normal  1 
 
 
-
 
NC_009052  Sbal_0833  transcriptional regulator, CadC  26.64 
 
 		 249 aa  79.3  0.00000000000005  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_3459  transcriptional regulator, CadC  26.64 
 
 		 249 aa  79.3  0.00000000000005  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009665  Shew185_3534  transcriptional regulator, CadC  26.85 
 
 		 249 aa  79  0.00000000000006  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_0793  putative transcriptional regulator, CadC  27.27 
 
 		 248 aa  77  0.0000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.790637  n/a   
 
 
-
 
NC_010506  Swoo_0885  transcriptional regulator, CadC  25.1 
 
 		 246 aa  72.8  0.000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_0760  response regulator receiver protein  24.29 
 
 		 273 aa  68.9  0.00000000006  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
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