13 homologs were found in PanDaTox collection
for query gene Smed_6406 on replicon NC_009622
Organism: Sinorhizobium medicae WSM419



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009622  Smed_6406  type IV secretory pathway VirB3 family protein  100 
 
 		 99 aa  199  7e-51  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009669  Oant_4563  type IV secretory pathway VirB3 family protein  69.7 
 
 		 99 aa  138  1.9999999999999998e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.185995  n/a   
 
 
-
 
NC_008242  Meso_4178  type IV secretory pathway, VirB3-like  59.6 
 
 		 99 aa  123  8.000000000000001e-28  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007960  Nham_4446  type IV secretory pathway, VirB3-like  39.78 
 
 		 98 aa  63.5  0.0000000008  Nitrobacter hamburgensis X14  Bacteria  normal  0.593094  n/a   
 
 
-
 
NC_012792  Vapar_5815  type IV secretory pathway VirB3 family protein  34 
 
 		 122 aa  55.5  0.0000002  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_009955  Dshi_3640  type IV secretory pathway VirB3 family protein  32.95 
 
 		 92 aa  54.3  0.0000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  0.154816 
 
 
-
 
NC_009957  Dshi_3975  type IV secretory pathway VirB3 family protein  32.95 
 
 		 92 aa  53.9  0.0000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  n/a   
 
 
-
 
NC_008042  TM1040_3820  type IV secretory pathway, VirB3-like  30 
 
 		 81 aa  44.3  0.0006  Ruegeria sp. TM1040  Bacteria  normal  0.300234  normal  0.0295906 
 
 
-
 
NC_007799  ECH_0494  type IV secretion system protein VirB3  30.59 
 
 		 97 aa  41.6  0.004  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.502726  n/a   
 
 
-
 
NC_007354  Ecaj_0534  type IV secretion system protein VirB3  29.41 
 
 		 101 aa  40.8  0.005  Ehrlichia canis str. Jake  Bacteria  normal  0.469431  n/a   
 
 
-
 
NC_007951  Bxe_A1755  putative type IV secretion system protein VirB3/TraD  31.31 
 
 		 106 aa  40.8  0.006  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.958773 
 
 
-
 
NC_007953  Bxe_C0449  putative type IV secretion system protein VirB3/TraD  32 
 
 		 110 aa  40.8  0.006  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002978  WD0859  type IV secretion system protein VirB3  29.27 
 
 		 98 aa  40  0.01  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>