| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5815 |
|---|
| Symbol | |
|---|
| ID | 7974936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 519691 |
|---|
| End bp | 520059 |
|---|
| Gene Length | 369 bp |
|---|
| Protein Length | 122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644796396 |
|---|
| Product | type IV secretory pathway VirB3 family protein |
|---|
| Protein accession | YP_002947670 |
|---|
| Protein GI | 239820485 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3702] Type IV secretory pathway, VirB3 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCA ATCAGGGCAT TGCCGCGAAC CCCCTGTTCG TCGGCATGAC GCGGCCCTCG
ATGGTCTGGG GCGTCACCTA CTCGGCCATG ATGTTCAACA TCGTCGTCAC GACCGAGTCG
TTCATCGTGA CCAAGAGCCT CGCGTGGCTG CTGGCCTTCG TACCGATCCA CGGCGTGCTC
TACCTGGTCT GCCTGTACGA GCCGCGCTTC TTCGATCTGC TGCAGCTCTG GGGCCGCACG
CGCCTGCCGG CCATGCTCGG CGGCAATCTG CGGTTCTGGC GTGCGAACTC GTACAGTCCC
CTGGCGCTGG ACATGCCTGA CTGGCGAGGG CATCGCCGCA TGCGCACGCC GCCCGTGACC
TTGGTCTGA
|
|---|
| Protein sequence | MSRNQGIAAN PLFVGMTRPS MVWGVTYSAM MFNIVVTTES FIVTKSLAWL LAFVPIHGVL
YLVCLYEPRF FDLLQLWGRT RLPAMLGGNL RFWRANSYSP LALDMPDWRG HRRMRTPPVT
LV
|
|---|
| |