24 homologs were found in PanDaTox collection
for query gene Sfri_0653 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_0653  hypothetical protein  100 
 
 		 248 aa  512  1e-144  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00719508  n/a   
 
 
-
 
NC_008322  Shewmr7_3240  lysine decarboxylase transcriptional regulator, CadC  30.43 
 
 		 247 aa  107  2e-22  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0940  transcriptional regulator-related protein  29.64 
 
 		 247 aa  104  1e-21  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0783  lysine decarboxylase transcriptional regulator, CadC  29.64 
 
 		 247 aa  104  1e-21  Shewanella sp. MR-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_3343  lysine decarboxylase transcriptional regulator, CadC  29.64 
 
 		 247 aa  104  2e-21  Shewanella sp. ANA-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_0879  hypothetical protein  26.98 
 
 		 248 aa  101  1e-20  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00268947  normal  1 
 
 
-
 
NC_009438  Sputcn32_0880  transcriptional regulator, CadC  25.9 
 
 		 247 aa  97.4  2e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.102623  n/a   
 
 
-
 
NC_010506  Swoo_0881  putative transcriptional regulator, CadC  28.4 
 
 		 246 aa  93.6  3e-18  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_3653  transcriptional regulator, CadC  26.98 
 
 		 249 aa  93.2  4e-18  Shewanella baltica OS195  Bacteria  normal  0.409424  normal  1 
 
 
-
 
NC_009665  Shew185_3534  transcriptional regulator, CadC  26.59 
 
 		 249 aa  92.4  6e-18  Shewanella baltica OS185  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_3459  transcriptional regulator, CadC  26.98 
 
 		 249 aa  92  7e-18  Shewanella baltica OS223  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009052  Sbal_0833  transcriptional regulator, CadC  26.98 
 
 		 249 aa  92  7e-18  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_3244  response regulator receiver protein  26.77 
 
 		 249 aa  89.7  3e-17  Shewanella sp. MR-7  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_0779  response regulator receiver protein  26.38 
 
 		 249 aa  87.4  2e-16  Shewanella sp. MR-4  Bacteria  normal  0.365042  normal  1 
 
 
-
 
NC_008700  Sama_2749  putative transcriptional regulator, CadC  27.95 
 
 		 251 aa  86.7  3e-16  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_0936  transcriptional regulator  25.4 
 
 		 248 aa  84.7  0.000000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3347  transcriptional regulator  26 
 
 		 249 aa  83.2  0.000000000000003  Shewanella sp. ANA-3  Bacteria  normal  0.730311  normal  1 
 
 
-
 
NC_009901  Spea_3438  winged helix family two component response transcriptional regulator  24.03 
 
 		 250 aa  76.6  0.0000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_3632  response regulator receiver protein  26.27 
 
 		 265 aa  72.4  0.000000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_0757  putative transcriptional regulator, CadC  31.91 
 
 		 151 aa  66.6  0.0000000003  Shewanella loihica PV-4  Bacteria  normal  0.19634  normal  1 
 
 
-
 
NC_009831  Ssed_0883  response regulator receiver protein  23.51 
 
 		 244 aa  62.4  0.000000006  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0885  transcriptional regulator, CadC  24.9 
 
 		 246 aa  62.4  0.000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_0760  response regulator receiver protein  22.83 
 
 		 273 aa  58.9  0.00000007  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_0793  putative transcriptional regulator, CadC  20.68 
 
 		 248 aa  58.2  0.0000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.790637  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>