More than 300 homologs were found in PanDaTox collection
for query gene RPC_2252 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_2006  acyl-CoA dehydrogenase  75.83 
 
 
546 aa  813    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.315966  normal  0.474092 
 
 
-
 
NC_007778  RPB_2427  Acyl-CoA dehydrogenase-like  74.04 
 
 
549 aa  842    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0516258 
 
 
-
 
NC_007925  RPC_2252  acyl-CoA dehydrogenase-like  100 
 
 
549 aa  1122    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.459209 
 
 
-
 
NC_007958  RPD_3025  acyl-CoA dehydrogenase-like  73.86 
 
 
551 aa  836    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.285589  normal  0.509442 
 
 
-
 
NC_009485  BBta_4724  isovaleryl CoA dehydrogenase (adaptive response to DNA-methylation damage)  76.97 
 
 
547 aa  845    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2281  acyl-CoA dehydrogenase-like  77.33 
 
 
547 aa  838    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3525  acyl-CoA dehydrogenase domain protein  72.94 
 
 
549 aa  820    Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00283782  n/a   
 
 
-
 
NC_011894  Mnod_1083  acyl-CoA dehydrogenase domain protein  60.59 
 
 
538 aa  564  1.0000000000000001e-159  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2837  acyl-CoA dehydrogenase domain-containing protein  54.04 
 
 
563 aa  554  1e-156  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.218018  normal 
 
 
-
 
NC_010511  M446_2109  acyl-CoA dehydrogenase domain-containing protein  59.71 
 
 
538 aa  541  9.999999999999999e-153  Methylobacterium sp. 4-46  Bacteria  normal  0.839474  normal  0.02273 
 
 
-
 
NC_009504  BOV_A0562  acyl-CoA dehydrogenase family protein  53.69 
 
 
551 aa  516  1.0000000000000001e-145  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0598  acyl-CoA dehydrogenase family protein  53.88 
 
 
551 aa  517  1.0000000000000001e-145  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3665  acyl-CoA dehydrogenase domain-containing protein  53.61 
 
 
530 aa  509  1e-143  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1763  acyl-CoA dehydrogenase  51.87 
 
 
547 aa  495  1e-139  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0937  acyl-CoA dehydrogenase domain-containing protein  55.43 
 
 
550 aa  486  1e-136  Sinorhizobium medicae WSM419  Bacteria  normal  0.0783205  normal  0.320955 
 
 
-
 
NC_008254  Meso_1360  acyl-CoA dehydrogenase-like  53.13 
 
 
543 aa  485  1e-136  Chelativorans sp. BNC1  Bacteria  normal  0.165599  n/a   
 
 
-
 
NC_009720  Xaut_1264  acyl-CoA dehydrogenase domain-containing protein  56.51 
 
 
545 aa  483  1e-135  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.288039 
 
 
-
 
NC_011004  Rpal_0592  acyl-CoA dehydrogenase domain protein  49.16 
 
 
555 aa  476  1e-133  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.684564  n/a   
 
 
-
 
NC_007951  Bxe_A0173  Acyl-CoA dehydrogenase  48.32 
 
 
561 aa  475  1e-133  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1392  acyl-CoA dehydrogenase domain protein  54.18 
 
 
552 aa  472  1e-132  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00476541  normal  0.125996 
 
 
-
 
NC_011369  Rleg2_1300  acyl-CoA dehydrogenase domain protein  53.97 
 
 
552 aa  469  1.0000000000000001e-131  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000933143  hitchhiker  0.00773759 
 
 
-
 
NC_009953  Sare_4366  acyl-CoA dehydrogenase domain-containing protein  48.72 
 
 
542 aa  471  1.0000000000000001e-131  Salinispora arenicola CNS-205  Bacteria  normal  0.128811  hitchhiker  0.00458691 
 
 
-
 
NC_010681  Bphyt_3763  acyl-CoA dehydrogenase domain protein  47.35 
 
 
561 aa  471  1.0000000000000001e-131  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.75018 
 
 
-
 
NC_009380  Strop_3981  acyl-CoA dehydrogenase domain-containing protein  50.66 
 
 
542 aa  468  9.999999999999999e-131  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3582  acyl-CoA dehydrogenase domain-containing protein  51.84 
 
 
563 aa  466  9.999999999999999e-131  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2924  acyl-CoA dehydrogenase domain-containing protein  49.72 
 
 
557 aa  462  1e-129  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_0410  Acyl-CoA dehydrogenase  48.02 
 
 
559 aa  463  1e-129  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0215  acyl-CoA dehydrogenase domain-containing protein  48.02 
 
 
559 aa  462  1e-129  Burkholderia pseudomallei 668  Bacteria  normal  0.389081  n/a   
 
 
-
 
NC_007651  BTH_I0193  acyl-CoA dehydrogenase domain-containing protein  48.11 
 
 
559 aa  462  1e-129  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2251  acyl-CoA dehydrogenase domain-containing protein  49.91 
 
 
534 aa  463  1e-129  Thermobispora bispora DSM 43833  Bacteria  normal  0.141599  normal  0.0458056 
 
 
-
 
NC_013159  Svir_38660  acyl-CoA dehydrogenase  49.15 
 
 
548 aa  459  9.999999999999999e-129  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0227  acyl-CoA dehydrogenase domain-containing protein  48.02 
 
 
559 aa  461  9.999999999999999e-129  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2832  acyl-CoA dehydrogenase domain-containing protein  48.04 
 
 
559 aa  460  9.999999999999999e-129  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.716167  normal  0.258614 
 
 
-
 
NC_009439  Pmen_3764  acyl-CoA dehydrogenase domain-containing protein  53.95 
 
 
549 aa  461  9.999999999999999e-129  Pseudomonas mendocina ymp  Bacteria  normal  0.598594  normal  0.0554036 
 
 
-
 
NC_012791  Vapar_2916  acyl-CoA dehydrogenase domain protein  47.64 
 
 
546 aa  456  1e-127  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0523  acyl-CoA dehydrogenase-like  51.68 
 
 
562 aa  456  1e-127  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6703  acyl-CoA dehydrogenase  49.09 
 
 
539 aa  457  1e-127  Streptosporangium roseum DSM 43021  Bacteria  normal  0.619428  normal  0.598505 
 
 
-
 
NC_008228  Patl_3912  acyl-CoA dehydrogenase-like  46.99 
 
 
548 aa  457  1e-127  Pseudoalteromonas atlantica T6c  Bacteria  decreased coverage  0.0000271467  n/a   
 
 
-
 
NC_012856  Rpic12D_3316  acyl-CoA dehydrogenase domain protein  47.56 
 
 
553 aa  456  1e-127  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0204  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  46.84 
 
 
553 aa  455  1.0000000000000001e-126  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3639  acyl-CoA dehydrogenase domain protein  47.74 
 
 
553 aa  455  1.0000000000000001e-126  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0161  acyl-CoA dehydrogenase-like protein  48.11 
 
 
561 aa  453  1.0000000000000001e-126  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1136  putative acyl-CoA dehydrogenase  53.05 
 
 
549 aa  453  1.0000000000000001e-126  Pseudomonas aeruginosa PA7  Bacteria  normal  0.113236  n/a   
 
 
-
 
NC_008463  PA14_12450  putative acyl-CoA dehydrogenase  53.05 
 
 
549 aa  453  1.0000000000000001e-126  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.744649  normal 
 
 
-
 
NC_008781  Pnap_1847  acyl-CoA dehydrogenase domain-containing protein  46.45 
 
 
550 aa  453  1.0000000000000001e-126  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.440141  normal  0.493968 
 
 
-
 
NC_013947  Snas_5650  acyl-CoA dehydrogenase domain-containing protein  49.35 
 
 
542 aa  446  1.0000000000000001e-124  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.108739  normal  0.35349 
 
 
-
 
NC_011071  Smal_2958  acyl-CoA dehydrogenase domain protein  49.91 
 
 
545 aa  447  1.0000000000000001e-124  Stenotrophomonas maltophilia R551-3  Bacteria  hitchhiker  0.000179146  hitchhiker  0.0000711281 
 
 
-
 
NC_009921  Franean1_6434  acyl-CoA dehydrogenase domain-containing protein  53.36 
 
 
572 aa  444  1e-123  Frankia sp. EAN1pec  Bacteria  normal  0.441597  normal  0.0443202 
 
 
-
 
NC_009436  Ent638_0365  isovaleryl CoA dehydrogenase  51.95 
 
 
540 aa  444  1e-123  Enterobacter sp. 638  Bacteria  normal  normal  0.013198 
 
 
-
 
NC_007974  Rmet_3817  acyl-CoA dehydrogenase  45.72 
 
 
548 aa  443  1e-123  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0120  acyl-CoA dehydrogenase domain-containing protein  46.51 
 
 
564 aa  442  1e-123  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6225  acyl-CoA dehydrogenase domain protein  47.99 
 
 
529 aa  443  1e-123  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0975  acyl-CoA dehydrogenase-like protein  47.13 
 
 
551 aa  440  9.999999999999999e-123  Mycobacterium sp. MCS  Bacteria  normal  0.315485  n/a   
 
 
-
 
NC_011992  Dtpsy_0100  acyl-CoA dehydrogenase domain protein  47.75 
 
 
551 aa  441  9.999999999999999e-123  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1003  acyl-CoA dehydrogenase domain-containing protein  47.13 
 
 
551 aa  439  9.999999999999999e-123  Mycobacterium sp. JLS  Bacteria  normal  normal  0.265858 
 
 
-
 
NC_008705  Mkms_0993  acyl-CoA dehydrogenase domain-containing protein  47.13 
 
 
551 aa  440  9.999999999999999e-123  Mycobacterium sp. KMS  Bacteria  normal  normal  0.619354 
 
 
-
 
CP001509  ECD_04054  isovaleryl CoA dehydrogenase  51.07 
 
 
541 aa  435  1e-121  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4338  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  46.42 
 
 
549 aa  437  1e-121  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3826  isovaleryl CoA dehydrogenase  51.07 
 
 
541 aa  435  1e-121  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000253189 
 
 
-
 
NC_007492  Pfl01_4943  Acyl-CoA dehydrogenase-like  47.6 
 
 
549 aa  438  1e-121  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4747  isovaleryl CoA dehydrogenase  51.07 
 
 
541 aa  436  1e-121  Escherichia coli E24377A  Bacteria  normal  0.319243  n/a   
 
 
-
 
NC_010501  PputW619_0640  acyl-CoA dehydrogenase domain-containing protein  51.37 
 
 
559 aa  437  1e-121  Pseudomonas putida W619  Bacteria  normal  0.749852  normal 
 
 
-
 
NC_012892  B21_04016  hypothetical protein  51.07 
 
 
541 aa  435  1e-121  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1752  acyl-CoA dehydrogenase domain protein  48.86 
 
 
550 aa  437  1e-121  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.907741  normal 
 
 
-
 
NC_007948  Bpro_2564  acyl-CoA dehydrogenase-like  46.88 
 
 
579 aa  436  1e-121  Polaromonas sp. JS666  Bacteria  normal  normal  0.375383 
 
 
-
 
NC_010498  EcSMS35_4658  isovaleryl CoA dehydrogenase  51.07 
 
 
541 aa  436  1e-121  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.61602 
 
 
-
 
NC_013510  Tcur_1782  acyl-CoA dehydrogenase domain protein  48.6 
 
 
543 aa  436  1e-121  Thermomonospora curvata DSM 43183  Bacteria  normal  0.121975  n/a   
 
 
-
 
NC_008340  Mlg_1719  acyl-CoA dehydrogenase domain-containing protein  50.22 
 
 
559 aa  438  1e-121  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.447043 
 
 
-
 
NC_011353  ECH74115_5703  isovaleryl CoA dehydrogenase  48.43 
 
 
541 aa  435  1e-121  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_09290  acyl-CoA dehydrogenase  49.28 
 
 
571 aa  438  1e-121  Azotobacter vinelandii DJ  Bacteria  normal  0.142361  n/a   
 
 
-
 
NC_008782  Ajs_0081  acyl-CoA dehydrogenase domain-containing protein  47.38 
 
 
551 aa  438  1e-121  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_3806  acyl-CoA dehydrogenase domain protein  51.07 
 
 
541 aa  434  1e-120  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4780  acyl-CoA dehydrogenase domain-containing protein  50.95 
 
 
550 aa  434  1e-120  Pseudomonas putida KT2440  Bacteria  normal  0.303527  hitchhiker  0.00591476 
 
 
-
 
NC_009800  EcHS_A4431  isovaleryl CoA dehydrogenase  50.85 
 
 
541 aa  432  1e-120  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4717  isovaleryl CoA dehydrogenase  51.07 
 
 
541 aa  434  1e-120  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0131  acyl-CoA dehydrogenase domain-containing protein  45.19 
 
 
550 aa  432  1e-120  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4656  acyl-CoA dehydrogenase domain-containing protein  48.4 
 
 
550 aa  434  1e-120  Pseudomonas putida F1  Bacteria  normal  normal  0.216664 
 
 
-
 
NC_011138  MADE_00944  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  44.26 
 
 
560 aa  432  1e-120  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.874747  n/a   
 
 
-
 
NC_014210  Ndas_2819  acyl-CoA dehydrogenase domain protein  45.99 
 
 
543 aa  432  1e-120  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.708717  normal  0.776174 
 
 
-
 
NC_011149  SeAg_B4655  isovaleryl CoA dehydrogenase  49.35 
 
 
540 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1017  acyl-CoA dehydrogenase domain protein  47.68 
 
 
549 aa  429  1e-119  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2938  acyl-CoA dehydrogenase-like  45.01 
 
 
550 aa  430  1e-119  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4738  isovaleryl CoA dehydrogenase  49.13 
 
 
540 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.11297  normal 
 
 
-
 
NC_011083  SeHA_C4795  isovaleryl CoA dehydrogenase  49.57 
 
 
540 aa  431  1e-119  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0438512  normal 
 
 
-
 
NC_008542  Bcen2424_0117  acyl-CoA dehydrogenase domain-containing protein  45.01 
 
 
550 aa  430  1e-119  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4774  isovaleryl CoA dehydrogenase  49.68 
 
 
540 aa  430  1e-119  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4834  acyl-CoA dehydrogenase domain-containing protein  51.32 
 
 
550 aa  428  1e-118  Pseudomonas putida GB-1  Bacteria  normal  0.938262  normal 
 
 
-
 
NC_003295  RSc0121  putative oxidoreductase flavoprotein FAD  46.94 
 
 
557 aa  427  1e-118  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3297  Acyl-CoA dehydrogenase  45.01 
 
 
550 aa  425  1e-118  Burkholderia sp. 383  Bacteria  normal  0.165535  normal 
 
 
-
 
NC_013441  Gbro_4257  acyl-CoA dehydrogenase domain protein  50.33 
 
 
559 aa  426  1e-118  Gordonia bronchialis DSM 43247  Bacteria  normal  0.175294  n/a   
 
 
-
 
NC_011094  SeSA_A4645  isovaleryl CoA dehydrogenase  49.35 
 
 
540 aa  428  1e-118  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2353  acyl-CoA dehydrogenase domain-containing protein  46.2 
 
 
557 aa  426  1e-118  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0116  acyl-CoA dehydrogenase domain-containing protein  45.82 
 
 
550 aa  427  1e-118  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1269  acyl-CoA dehydrogenase domain-containing protein  48.09 
 
 
551 aa  428  1e-118  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.934265 
 
 
-
 
NC_009565  TBFG_10686  acyl-CoA dehydrogenase fadE8  45.5 
 
 
542 aa  422  1e-117  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_5086  acyl-CoA dehydrogenase domain-containing protein  45.93 
 
 
552 aa  420  1e-116  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.480357  normal  0.429273 
 
 
-
 
NC_009832  Spro_0440  isovaleryl CoA dehydrogenase  49.56 
 
 
544 aa  421  1e-116  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00000763646 
 
 
-
 
NC_007963  Csal_2827  acyl-CoA dehydrogenase-like protein  51.1 
 
 
550 aa  422  1e-116  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.952078  n/a   
 
 
-
 
NC_008686  Pden_0948  acyl-CoA dehydrogenase domain-containing protein  51.07 
 
 
542 aa  416  9.999999999999999e-116  Paracoccus denitrificans PD1222  Bacteria  normal  0.165431  normal 
 
 
-
 
NC_013739  Cwoe_5281  acyl-CoA dehydrogenase domain protein  47.82 
 
 
550 aa  415  1e-114  Conexibacter woesei DSM 14684  Bacteria  normal  0.656776  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>