10 homologs were found in PanDaTox collection
for query gene PputGB1_4897 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_4897  hypothetical protein  100 
 
 
447 aa  923    Pseudomonas putida GB-1  Bacteria  normal  normal  0.139412 
 
 
-
 
NC_009656  PSPA7_4058  carbohydrate binding domain-containing protein  32.05 
 
 
349 aa  100  6e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0300  metallopeptidase, putative  24.69 
 
 
528 aa  64.7  0.000000003  Pseudomonas putida KT2440  Bacteria  normal  0.292389  hitchhiker  0.00022418 
 
 
-
 
NC_010501  PputW619_4908  hypothetical protein  25.09 
 
 
535 aa  63.2  0.000000009  Pseudomonas putida W619  Bacteria  normal  0.822853  normal  0.0192244 
 
 
-
 
NC_008312  Tery_1835  peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72  25.99 
 
 
2062 aa  59.3  0.0000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0320  Ricin B lectin  30 
 
 
565 aa  55.8  0.000002  Pseudomonas putida F1  Bacteria  normal  0.325605  normal  0.136179 
 
 
-
 
NC_008463  PA14_28100  hypothetical protein  23.67 
 
 
602 aa  46.2  0.001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.118407  normal 
 
 
-
 
NC_010322  PputGB1_2257  peptidyl-Asp metalloendopeptidase  35.8 
 
 
390 aa  46.6  0.001  Pseudomonas putida GB-1  Bacteria  normal  0.251039  normal  0.490974 
 
 
-
 
NC_009656  PSPA7_2446  hypothetical protein  26.75 
 
 
599 aa  45.4  0.002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0772125  n/a   
 
 
-
 
NC_014158  Tpau_0017  hypothetical protein  28.02 
 
 
630 aa  43.9  0.006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
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