12 homologs were found in PanDaTox collection
for query gene PA14_42340 on replicon NC_008463
Organism: Pseudomonas aeruginosa UCBPP-PA14



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008463  PA14_42340  type III export protein PscD  100 
 
 		 432 aa  852    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010157  YpAngola_B0055  type III secretion apparatus protein YscD  42.82 
 
 		 419 aa  314  1.9999999999999998e-84  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_01701  hypothetical protein  33.81 
 
 		 433 aa  224  2e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003338  type III secretion inner membrane protein YscD  33.33 
 
 		 433 aa  221  3e-56  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_011080  SNSL254_A1507  type III secretion apparatus protein YscD/HrpQ family  25.11 
 
 		 399 aa  60.5  0.00000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.574995  hitchhiker  0.00233459 
 
 
-
 
NC_011205  SeD_A1947  type III secretion apparatus protein, YscD/HrpQ family  25.11 
 
 		 399 aa  60.5  0.00000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  0.389941 
 
 
-
 
NC_011083  SeHA_C1529  type III secretion apparatus protein, YscD/HrpQ family  25.11 
 
 		 399 aa  60.1  0.00000007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.055163 
 
 
-
 
NC_011094  SeSA_A1492  type III secretion apparatus protein, YscD/HrpQ family  25.11 
 
 		 399 aa  60.1  0.00000007  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.519632 
 
 
-
 
NC_011149  SeAg_B1777  type III secretion apparatus protein, YscD/HrpQ family  25.11 
 
 		 399 aa  59.7  0.0000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0349319  n/a   
 
 
-
 
NC_011353  ECH74115_5053  type III secretion apparatus protein, YscD/HrpQ family  20.82 
 
 		 406 aa  58.9  0.0000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012912  Dd1591_1890  type III secretion apparatus protein, YscD/HrpQ family  30.08 
 
 		 323 aa  46.6  0.0008  Dickeya zeae Ech1591  Bacteria  normal  0.925496  n/a   
 
 
-
 
NC_009997  Sbal195_2250  YscD/HrpQ family type III secretion apparatus protein  23.88 
 
 		 401 aa  44.3  0.004  Shewanella baltica OS195  Bacteria  normal  0.123284  normal  0.0388601 
 
 
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