13 homologs were found in PanDaTox collection
for query gene Lcho_1959 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1959  hypothetical protein  100 
 
 
343 aa  716    Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_3012  hypothetical protein  46.26 
 
 
342 aa  306  5.0000000000000004e-82  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3756  hypothetical protein  26.93 
 
 
361 aa  104  2e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2563  hypothetical protein  25.65 
 
 
385 aa  102  7e-21  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.791558 
 
 
-
 
NC_009513  Lreu_1048  superfamily I DNA/RNA helicase-like protein  24.58 
 
 
363 aa  91.7  2e-17  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4761  putative DNA helicase II / ATP-dependent DNA helicase PcrA  26.06 
 
 
345 aa  79.7  0.00000000000006  Nocardioides sp. JS614  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00629  hypothetical protein  29.22 
 
 
355 aa  65.5  0.000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.11606  n/a   
 
 
-
 
NC_007336  Reut_C6151  hypothetical protein  30.91 
 
 
284 aa  51.2  0.00003  Ralstonia eutropha JMP134  Bacteria  normal  0.361634  n/a   
 
 
-
 
NC_009457  VC0395_A2355  hypothetical protein  25.77 
 
 
458 aa  48.1  0.0002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1870  hypothetical protein  25.12 
 
 
484 aa  48.5  0.0002  Shewanella baltica OS185  Bacteria  normal  0.649407  n/a   
 
 
-
 
NC_009997  Sbal195_3382  hypothetical protein  25.12 
 
 
484 aa  48.5  0.0002  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.00378927 
 
 
-
 
NC_012918  GM21_1567  superfamily I DNA and RNA helicase-like protein  21.67 
 
 
629 aa  45.8  0.001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2668  superfamily I DNA and RNA helicase-like protein  20.82 
 
 
629 aa  42.7  0.009  Geobacter bemidjiensis Bem  Bacteria  normal  0.111087  n/a   
 
 
-
 
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