26 homologs were found in PanDaTox collection
for query gene Cphamn1_2181 on replicon NC_010831
Organism: Chlorobium phaeobacteroides BS1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010831  Cphamn1_2181  ComEA-related protein  100 
 
 
163 aa  325  2.0000000000000001e-88  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.204715  normal 
 
 
-
 
NC_011059  Paes_1947  ComEA-related protein  48.17 
 
 
162 aa  131  3.9999999999999996e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2129  Helix-hairpin-helix DNA-binding class 1  37.16 
 
 
183 aa  103  1e-21  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0279  helix-hairpin-helix DNA-binding, class 1  36.69 
 
 
170 aa  102  3e-21  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.0666244 
 
 
-
 
NC_011060  Ppha_2555  Helix-hairpin-helix DNA-binding class 1  40.7 
 
 
172 aa  99  2e-20  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2285  helix-hairpin-helix DNA-binding motif-containing protein  37.14 
 
 
175 aa  97.1  1e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1625  helix-hairpin-helix DNA-binding, class 1  36.63 
 
 
172 aa  81.3  0.000000000000005  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1103  competence protein ComEA helix-hairpin-helix repeat protein  37.18 
 
 
187 aa  51.6  0.000005  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.0000407291  n/a   
 
 
-
 
NC_008228  Patl_3198  helix-hairpin-helix repeat-containing competence protein ComEA  41.27 
 
 
102 aa  48.9  0.00003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1230  helix-hairpin-helix repeat-containing competence protein ComEA  32.94 
 
 
296 aa  48.5  0.00004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.890666  n/a   
 
 
-
 
NC_009616  Tmel_1741  helix-hairpin-helix repeat-containing competence protein ComEA  40.98 
 
 
184 aa  47.8  0.00007  Thermosipho melanesiensis BI429  Bacteria  normal  0.0277947  n/a   
 
 
-
 
NC_010320  Teth514_2104  helix-hairpin-helix repeat-containing competence protein ComEA  39.13 
 
 
201 aa  46.2  0.0002  Thermoanaerobacter sp. X514  Bacteria  normal  0.854635  n/a   
 
 
-
 
NC_013947  Snas_5471  competence protein ComEA helix-hairpin-helix repeat protein  30.12 
 
 
225 aa  45.4  0.0003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1157  comE operon protein 1, putative  30.77 
 
 
224 aa  44.7  0.0005  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2014  DNA uptake protein  34.83 
 
 
148 aa  43.9  0.001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2451  competence protein ComEA helix-hairpin-helix repeat protein  33.33 
 
 
204 aa  43.5  0.001  Geobacillus sp. WCH70  Bacteria  normal  0.0119288  n/a   
 
 
-
 
NC_009664  Krad_3435  competence protein ComEA helix-hairpin-helix repeat protein  42.86 
 
 
304 aa  43.1  0.002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0218719  normal  0.0106956 
 
 
-
 
NC_008609  Ppro_2312  hypothetical protein  31.15 
 
 
222 aa  43.1  0.002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.92281  n/a   
 
 
-
 
NC_007498  Pcar_0740  DNA uptake/competence protein  34.92 
 
 
128 aa  42.7  0.002  Pelobacter carbinolicus DSM 2380  Bacteria  decreased coverage  5.4977199999999995e-21  n/a   
 
 
-
 
NC_013440  Hoch_5823  competence protein ComEA helix-hairpin-helix repeat protein  32.35 
 
 
158 aa  43.1  0.002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3304  competence protein ComEA helix-hairpin-helix repeat protein  31.43 
 
 
214 aa  42.4  0.003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0506678  normal 
 
 
-
 
NC_013411  GYMC61_1000  competence protein ComEA helix-hairpin-helix repeat protein  31.31 
 
 
207 aa  42  0.003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008578  Acel_0773  helix-hairpin-helix DNA-binding motif-containing protein  30.77 
 
 
250 aa  41.6  0.005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.466163  normal  0.364804 
 
 
-
 
NC_007777  Francci3_1257  helix-hairpin-helix DNA-binding, class 1  32.91 
 
 
422 aa  41.2  0.005  Frankia sp. CcI3  Bacteria  normal  normal  0.0994426 
 
 
-
 
NC_010483  TRQ2_1756  helix-hairpin-helix repeat-containing competence protein ComEA  34.94 
 
 
181 aa  41.2  0.006  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2033  competence protein ComEA helix-hairpin-helix repeat protein  36.36 
 
 
93 aa  41.2  0.006  Desulfohalobium retbaense DSM 5692  Bacteria  unclonable  0.00000000000281796  hitchhiker  0.000016405 
 
 
-
 
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