27 homologs were found in PanDaTox collection
for query gene Bxe_AR0037 on replicon NC_007951
Organism: Burkholderia xenovorans LB400



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007951  Bxe_AR0037  SRP RNA; RNA component of signal recognition particle  100 
 
 		 103 bp  204  3e-51  Burkholderia xenovorans LB400  Bacteria  normal  0.0480154  normal  0.14227 
 
 
-
 
NC_010622  Bphy_R0002    96.12 
 
 		 103 bp  172  1e-41  Burkholderia phymatum STM815  Bacteria  normal  0.180442  normal  0.539085 
 
 
-
 
NC_009080  BMA10247_3560  signal recognition particle RNA  95 
 
 		 102 bp  159  2e-37  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_R0026  SRP RNA; RNA component of signal recognition particle  95.83 
 
 		 104 bp  159  2e-37  Cupriavidus metallidurans CH34  Bacteria  normal  0.283025  normal  0.297778 
 
 
-
 
NC_010084  Bmul_R0038  SRP RNA; RNA component of signal recognition particle  94.17 
 
 		 103 bp  157  6e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0368326  normal  0.266058 
 
 
-
 
NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  94.79 
 
 		 104 bp  151  4e-35  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
-
 
NC_007347  Reut_AR0024  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 105 bp  143  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.255506  n/a   
 
 
-
 
NC_007510  Bcep18194_AR0056  SRP RNA; RNA component of signal recognition particle  91.26 
 
 		 103 bp  133  9e-30  Burkholderia sp. 383  Bacteria  normal  0.0102004  normal  0.775524 
 
 
-
 
NC_008062  Bcen_R0102  SRP RNA; RNA component of signal recognition particle  91.26 
 
 		 103 bp  133  9e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105096  n/a   
 
 
-
 
NC_008542  Bcen2424_R0046  SRP RNA  91.26 
 
 		 103 bp  133  9e-30  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00820406  n/a   
 
 
-
 
NC_010508  Bcenmc03_R0048    91.26 
 
 		 103 bp  133  9e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0344887  normal  0.132073 
 
 
-
 
NC_010551  BamMC406_R0048    90.1 
 
 		 103 bp  121  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0963367  normal  0.0663879 
 
 
-
 
NC_008390  Bamb_R0048  SRP RNA; RNA component of signal recognition particle  90 
 
 		 105 bp  119  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.267779  n/a   
 
 
-
 
NC_010524  Lcho_R0047  SRP RNA; RNA component of signal recognition particle  85.86 
 
 		 104 bp  85.7  0.000000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20206 
 
 
-
 
NC_010531  Pnec_R0015    91.07 
 
 		 105 bp  71.9  0.00000000003  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.303512  normal  1 
 
 
-
 
NC_009379  Pnuc_R0019  SRP RNA; RNA component of signal recognition particle  91.07 
 
 		 105 bp  71.9  0.00000000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  92.5 
 
 		 101 bp  56  0.000002  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  94.12 
 
 		 104 bp  52  0.00003  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 101 bp  50.1  0.0001  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
-
 
NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  93.94 
 
 		 92 bp  50.1  0.0001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
-
 
NC_010002  Daci_R0075  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 101 bp  46.1  0.002  Delftia acidovorans SPH-1  Bacteria  normal  0.643834  normal  1 
 
 
-
 
NC_009654  Mmwyl1_R0044  SRP RNA; RNA component of signal recognition particle  93.55 
 
 		 117 bp  46.1  0.002  Marinomonas sp. MWYL1  Bacteria  normal  0.577692  normal  0.0469682 
 
 
-
 
NC_008782  Ajs_R0030  SRP RNA  93.33 
 
 		 101 bp  44.1  0.007  Acidovorax sp. JS42  Bacteria  normal  0.794672  normal  0.947694 
 
 
-
 
NC_011662  Tmz1t_R0010  SRP RNA; RNA component of signal recognitionparti cle  82.86 
 
 		 106 bp  44.1  0.007  Thauera sp. MZ1T  Bacteria  normal  0.33139  n/a   
 
 
-
 
NC_011992  Dtpsy_R0029  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 		 101 bp  44.1  0.007  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_RNA34  SRP RNA; RNA component of signal recognition particle  91.18 
 
 		 117 bp  44.1  0.007  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00314643  normal  1 
 
 
-
 
NC_013517  Sterm_R0011  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 88 bp  44.1  0.007  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>